Ketcher 3.9.0

What’s Changed

New features

  • #7690 – Allow for modification of the structure in the monomer creation wizard

  • #7730 – Continuation of attachment points editing in the monomer creation wizard

  • #7748 – AxoLabs format support

  • #7674 – Add ability to update monomers library API in SDF format

  • #7560 – Improving snake layout logic to include small molecules

  • #7709 – Update the help document (3.8.)

  • #8270 – Migrate to Indigo v1.37.0 in-browser module

Bugfixes and improvements

  • #7572 – “Create a monomer” option is missing in right-click menu when selection meets conditions

  • #7443 – Save to SDF button is missed on Salts and Solvents tab in Structure Library dialog

  • #7359 – Stereochemistry dialog crashes Ketcher if only one stereo bond on the canvas

  • #7697 – IDT alias of CHEM 5TAMRA is displayed wrong

  • #7919 – Change the symbol of CHEM Cy5.5 dye

  • #5417 – IDT aliases not shown at preview tooltip at Monomer Library

  • #5202 – Update visuals in Right-click context menu

  • #7395 – Line between Paste option and Create RNA antisense strand option is missing in the context menu

  • #7364 – Gap between icon and Delete label is twice bigger than it should be in Molecules mode

  • #7327 – Missing separator line above “Delete” in context menu

  • #7256 – Ketcher losts aliasHELM property for unknown monomers that makes export to HELM incorrect

  • #7912 – Errors in console in dev mode “Cannot update a component”

  • #7770 – Pressing Right Scroll Arrow button of top menu cause exception to console

  • #7700 – System allow to delete monomers leaving connected bonds on the canvas

  • #7934 – Export to SVG Documets works wrong for unsplite nucleotides with dash symbole (-) in alias

  • #7649 – Undo/redo works wrong for monomer reposition corrected by snapping

  • #7783 – Microstructure disappears from canvas in Sequence mode when adding new sequence row

  • #7918 – Change the IDT alias format in the library file and adjust the logic for IDT aliases on preview

  • #7581 – Undo/Redo buttons become inactive and canvas Up, Bottom, Left and Right toolbars remain active inside Monomer Wizard

  • #7893 – System shouldn’t allow to create monomers for selection with aromatic bonds to non-selected part

  • #7923 – Undo after deleting RNA preset connected to benzene ring leaves undeletable artifacts in Flex, Snake, and Sequence modes

  • #7914 – Microstructure not removed properly with Redo, duplicates on repeated Undo/Redo in Sequence mode

  • #7978 – Create monomer process changes atom of not related part of the molecule

  • #7979 – Pressing right Command key on Mac causes errors in DevTool Console (left Command works fine)

  • #8000 – Monomer Wizard allows creation of monomer with Functional Group

  • #8002 – No validation message shown for minimal monomer structure in Monomer Wizard

  • #8005 – Changing name for attachment points works wrong

  • #8040 – R2 attachment point is missing for vinU monomer

  • #8041 – System loads invdC monomer as unresolved monomer from AxoLabs

  • #8067 – Do not save added or updated monomer in local storage

  • #8068 – Unable to update monomer library via API on Remote Ketcher – input format error

  • #8070 – Existing Presets in the library disappear after adding new preset via API

  • #8123 – HELM (and IDT) alias collision is possible after library update

  • #8296 – Create Monomer tool can not be hidden by toolbar buttons config

Additional notes:

  • Ketcher 3.9.0 has been built and tested with Indigo version 1.37 (standalone and remote).