Ketcher 2.0.0beta¶
29 December 2017
Summary¶
We are glad to announce that a new Ketcher version 2.0.0 beta is released.
Please also use the latest indigo service version.
Our team sends best wishes for the Holiday Season!
New features and improvements:
Add the possibility to Save structure as Extended SMILE
Incorrect rendering (in Marvin) Ketcher SMILES for AND Enantiomer
Create saveSmiles() for Ketcher
Change the Bond type for several bonds at the same time
Structure can be fused bond to bond
Moving the structure with attached data
The ‘cyclic’ Rgroup definition should be forbidden
Problem with rendering a few condensed benzene rings
Add the possibility to save structure with necessary filename and add “Filename” field in the “Save Structure” window.
Include AuxInfo in InChI String
Templates for reaction
Bugfixes:
Reaction Mapping Tool doesn’t work after auto-mapping tool.
“Erase” doesn’t delete selected structures when user crosses the scrollbars.
Incorrect order of “OK” and “Cancel” buttons in the “Settings” window.
The hyphen in the SMILES string for the aromatic structures
The application buttons are rendered incorrectly
[Edge40]: Double “Cancel” appears in “Label Edit” menu after adding template from Template Library.
The ‘Label Edit’ window opens during the moving of the scroll box
Structure with Sgroup cannot be saved as template
Message doesn’t appears when user tries to dearomatize the structure with query-bonds.
Some templates have incorrect attachment atom
[Edge40]: Ketcher reboots after adding R-Group to the structure with template from Template Library
Fragment/Rectangle Selection tool’s focus disappeared after changing the screen size
Selection Tool: Lasso Selection tool becomes active on the Toolbar after copy/cut/paste with other Selection tool
Fragment Selection Tool: selection disappeared when user click the canvas keep pressing Shift key
[Cosmetic only] Misprint in the error message using paste tool
Fragment Selection Tool: uncomfortable selection
Multiple warning for the Selection Tools in the Dev Console
[Edit Templates]: incorrect rendering of the descriptors, reaction arrow and plus signs
Calculate CIP tool returns incorrect position type for s-group data
The joint bond of the fused fragment should be the same as the bond of the moved structure
Custom Templates:One atoms of the structure is not displayed in the “Label edit” window
Tool palette doesn’t close
Valence error after the Aromatize action
Template structures appear on canvas without Chiral flag
Problems with Undo after some actions with structures with Sgroups
The Double bonds in the first fused benzene are changed with the Single one
The structure is moved without stereo labels and attached data
Chiral flag persists on the canvas after delete or cut structure
Unpredictable behavior of the Undo action for the pasted/inserted reaction
[All browsers] Incorrect Undo/Redo behavior
About window: text about Indigo version overlaps the ‘Indigo Toolkit’ text
The Stereo labels and Attached Data keep their positions after the Flip action
Templates appear without saved attached data
Structure doesn’t save to template when user chooses any format except MDL Molfile
Ketcher hangs after user adds empty template to the canvas
Two structures with the same R-fragment Tool appeared as two separate structures inside different square brackets
Incorrect error message appears when “Filename” field in “Save Structure” window is empty.
The structures of the reaction are relocated relative to each other after save or cut/paste.
Selection tool’s focus disappeared after copy/paste of reaction arrow.
Reaction is relocated on the canvas after saving in rxn-format.
Incorrect bond rendering after refactoring
Buttons “Open From File”, “Cancel”, “Save To File” and “Save To Templates” have different styles.
The button “Open From File” doesn’t work when user clicks at this button before, below or after the text “Open From File”.
R-Group window appears when user clicks the scroll bar or scroll box
The Rotation angle value should appear
Checker: warning about Chirality