Indigo 1.36.0

Released 2025-10-16

Features

  • 905 Support for pagination in Bingo Elastic

  • 3092 Avoid overwriting cmake output directories variables

  • 3099 Support dev container

  • 2893 Reaction data support in KET-format

  • 3136 No attachment points check should be performed for terminal CHEMs on IDT import/export

  • 3135 Mark undefined stereocenters using the standardize function

  • 3085 HELM annotations support

Bugfixes and improvements

  • 3065 Indigo build fails when trying to build indigo-depict

  • 3060 CH labels are recognised as pseudo-atoms when parsing cdxml

  • 3096 Expand monomer works wrong with selection

  • 3105 bingo-elastic-python filter broken for exact/substructure

  • 3130 Bingo-postrgress-fingerprints tests are failing

  • 3071 Export to RDF V2000 doesn’t work if “star” atom on the canvas. System throws exception: Convert error! std::bad_cast

  • 3067 System can’t load HELM with inline SMILES if it has r-site star atom without square brackets

  • 3120 bingo-elastic-python reaction exact search do not use postprocess actions

  • 3150 Exception during molecules loading in test fixture

  • 3123 Unable to paste FASTA content from clipcoard

  • 3159 Export to HELM works wrong for custom monomers imported from HELM with inline SMILES

  • 3068, 3080, 3082, 3086, 3087, 3088, 3090, 3084 System can’t load atom properties (Charge, Isotope and Valence) in SMARTS with “star” atom. System throws exception.

  • 3144, 3147 Export to IDT baseless preset and modified phosphate

  • 3148 Export to IDT shouldn’t work if monomer at the end has no 3’ position IDT code

  • 3169 Export to IDT doesn’t work if R1-only CHEM stays on five prime position

Full Changelog: https://github.com/epam/Indigo/compare/indigo-1.35.0-rc.1…indigo-1.36.0