Indigo 1.24.0

Released 2024-10-04

Features

  • #2096 Support retrosynthetic arrows - PNG/SVG rendering

  • #2097 Add retrosynthetic arrow import/export for cdx/cdxml formats

  • #2031 Build a data structure for a reaction tree

  • #1619 Import/export of variant monomers from IDT

  • #2052 Position pathway reaction on canvas

  • #2015 Import/Export of variant monomers from Fasta/Sequence

  • #2028 PNG image support in CDX/CDXML

  • #2128 Add Multi-tail Arrows to Pathway Reactions Loaded from RDF

  • #2188 HELM 2 support: variant monomers

  • #2189 HELM 2 support: support for SMILES

Bugfixes

  • #2232 System replace arrows of diffrent types with Open Arrow type while loading from PPTX(CDX)

  • #2249 Arrow Open Angle changes to Arrow Filled Triangle after saving and opening in CDX/CDXML

  • #2120 Export the structure for nucleotides 2-Amino-dA does not work correctly

  • #2266 Error message is wrong for missing ratio number (PEPTIDE1{(A:+C:0.1)}$$$$V2.0)

  • #2300 HELM loading doesn’t work in remote version

  • #2293 Export IDT doesn’t work for natural ambiguous monomers

  • #2336 Ribose sugar doesn’t allow to load IDT custom mixed bases

  • #2358 Import of monomer with only one connection point (R2) doesn’t work

  • #2321 Export of multi-character monomer IDs inside ambiguous monomer works wrong

  • #2375 Export to IDT doesn’t work at all for mixed bases

  • #2356 Library ambiguous peptides loaded as mixtures from FASTA

  • #2357 Export to HELM doesn’t work if we connect peptide TO molecule

  • #2303 Import of variant monomers from Sequence doesn’t work for RNA and FASTA for RNA/DNA

  • #2355 Import of HELM with fractional ratio mixture values doesn’t work - system expects integer

  • #2421 Incorrect stereo-label placement for (E) and (Z) (indigo part)

  • #2417 The layout is incorrect with retrosynthetic arrow

Full Changelog: https://github.com/epam/Indigo/compare/indigo-1.24.0…indigo-1.23.0