Indigo 1.19.0

Released 2024-05-02

Features

  • #1755 Import and export fasta format for RNA, DNA and PEPTIDES

  • #1466 Export as sequence string for RNA, DNA and PEPTIDEs

Bugs

  • #1787 Some Bonds from ChemDraw don’t open in the Ketcher

  • #1776 Cannot add to Canvas saved in the Ketcher CDX file with Bond structures

  • #1775 Save to CDX converts triple bond to Single/Double Aromatic bond

  • #1774 Save to CDX converts aromatic benzene ring to dashed ring

  • #1425 Indexing of a substantial quantity of molecules instigates the indexing process for the entire file.

  • #1575 Basic hydrogen layout problem - angles of hydrogens are not perfect

  • #1771 Bingo version does not return current tag

  • #1761 Can’t export sequence with 1 monomer to molv3000

  • #1598 Macro: V3000 export: leaving groups are displayed as side chain connections for standard presets added to canvas

  • #1477 sequence id calculation for molv3000

  • #1563 Unable to load mol file: System throws exception: Convert error! Unexpected token ‘<’, “<!DOCTYPE “… is not valid JSON

  • #1852 Macro(Export FASTA): The header ‘Sequence N’ is missing, and ‘>’ symbol is located at end of the first sequence

  • #1822 Fasta: All Peptides should be saved to FASTA format and (use N/X symbol as well).

  • #1851 Macro(Import FASTA): The ‘;’ symbol is not recognized as a comment

  • #1786 Some bonds from Ketcher don’t display correctly in the Ketcher and the ChemDraw for CDXML format.

  • #1777 Some bonds don’t display correctly in ChemDraw when opening a saved Ketcher CDX file.

  • #1849 Macro(Import FASTA): The ‘ * ‘ symbol occurring between two letters is not recognized as a break in peptide chain

  • #1850 Macro(Import FASTA): The ‘>’ symbol is not recognized as indicating a new sequence

  • #1802 bad performance in WASM during the parsing of large sequences

  • #1848 Cannot save FASTA using the Remote mode

  • #1791 Aromatic is lost from Benzene while save to CDX/base64 CDX formats

  • #1774 Save to CDX converts aromatic benzene ring to dashed ring

  • #1773 Save to CDX converts plus and arrow into lone pair and line

  • #1796 Some bonds from ChemDraw don’t display correctly in the Ketcher.

  • #1814 Macro: System ignore spaces and line breaks when importing a sequence through Paste from Clipboard

  • #1801 No monomer full name when import from a sequence

  • #1161 bingo unable to index on sql server

  • #1773 Save to CDX converts plus and arrow into lone pair and line

  • #1774 Save to CDX converts aromatic benzene ring to dashed ring

  • #1796 Some bonds from ChemDraw don’t display correctly in the Ketcher.

  • #1881 Macro: Cannot load Peptides from our Library that are not connected by bonds using FASTA file

Full Changelog: https://github.com/epam/Indigo/compare/indigo-1.18.0…indigo-1.19.0