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A

ABS - Static variable in class com.epam.indigo.Indigo
 
addAtom(String) - Method in class com.epam.indigo.IndigoObject
 
addBond(IndigoObject, int) - Method in class com.epam.indigo.IndigoObject
 
addCatalyst(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
addConstraint(String, String) - Method in class com.epam.indigo.IndigoObject
 
addConstraintNot(String, String) - Method in class com.epam.indigo.IndigoObject
 
addConstraintOr(String, String) - Method in class com.epam.indigo.IndigoObject
 
addDataSGroup(int[], int[], String, String) - Method in class com.epam.indigo.IndigoObject
 
addDataSGroup(Collection<Integer>, Collection<Integer>, String, String) - Method in class com.epam.indigo.IndigoObject
 
addDecomposition(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
addProduct(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
addReactant(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
addRSite(String) - Method in class com.epam.indigo.IndigoObject
 
addSGroupAttachmentPoint(int, int, String) - Method in class com.epam.indigo.IndigoObject
 
addStereocenter(int, int, int, int) - Method in class com.epam.indigo.IndigoObject
 
addStereocenter(int, int, int, int, int) - Method in class com.epam.indigo.IndigoObject
 
addTemplate(IndigoObject, String) - Method in class com.epam.indigo.IndigoObject
 
alignAtoms(int[], float[]) - Method in class com.epam.indigo.IndigoObject
 
alignAtoms(Collection<Integer>, Collection<Float>) - Method in class com.epam.indigo.IndigoObject
 
ALLENE - Static variable in class com.epam.indigo.Indigo
 
allScaffolds() - Method in class com.epam.indigo.IndigoObject
 
AND - Static variable in class com.epam.indigo.Indigo
 
append(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
aromatize() - Method in class com.epam.indigo.IndigoObject
 
arrayAdd(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
at(int) - Method in class com.epam.indigo.IndigoObject
 
atomicNumber() - Method in class com.epam.indigo.IndigoObject
 
atomMappingNumber(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
automap() - Method in class com.epam.indigo.IndigoObject
 
automap(String) - Method in class com.epam.indigo.IndigoObject
 

B

b64cdx() - Method in class com.epam.indigo.IndigoObject
 
bond() - Method in class com.epam.indigo.IndigoObject
 
bondOrder() - Method in class com.epam.indigo.IndigoObject
 
bondStereo() - Method in class com.epam.indigo.IndigoObject
 
buildPkaModel(int, float, String) - Method in class com.epam.indigo.Indigo
 

C

canonicalSmarts() - Method in class com.epam.indigo.IndigoObject
 
canonicalSmiles() - Method in class com.epam.indigo.IndigoObject
 
cdxml() - Method in class com.epam.indigo.IndigoObject
 
CHAIN - Static variable in class com.epam.indigo.Indigo
 
changeStereocenterType(int) - Method in class com.epam.indigo.IndigoObject
 
charge() - Method in class com.epam.indigo.IndigoObject
 
check(String, String, String) - Method in class com.epam.indigo.Indigo
 
check() - Method in class com.epam.indigo.IndigoObject
 
check(String) - Method in class com.epam.indigo.IndigoObject
 
check3DStereo() - Method in class com.epam.indigo.IndigoObject
 
checkAmbiguousH() - Method in class com.epam.indigo.IndigoObject
 
checkBadValence() - Method in class com.epam.indigo.IndigoObject
 
checkChirality() - Method in class com.epam.indigo.IndigoObject
 
checkQuery() - Method in class com.epam.indigo.IndigoObject
 
checkResult(Object, int) - Static method in class com.epam.indigo.Indigo
 
checkResult(Object, Object, int) - Static method in class com.epam.indigo.Indigo
 
checkResultDouble(Object, double) - Static method in class com.epam.indigo.Indigo
 
checkResultFloat(Object, float) - Static method in class com.epam.indigo.Indigo
 
checkResultLong(Object, long) - Static method in class com.epam.indigo.Indigo
 
checkResultPointer(Object, Pointer) - Static method in class com.epam.indigo.Indigo
 
checkResultString(Object, Pointer) - Static method in class com.epam.indigo.Indigo
 
checkRGroups() - Method in class com.epam.indigo.IndigoObject
 
checkStereo() - Method in class com.epam.indigo.IndigoObject
 
checkStructure(String) - Method in class com.epam.indigo.Indigo
 
checkStructure(String, String) - Method in class com.epam.indigo.Indigo
 
checkValence() - Method in class com.epam.indigo.IndigoObject
 
CIS - Static variable in class com.epam.indigo.Indigo
 
clean2d() - Method in class com.epam.indigo.IndigoObject
 
clear() - Method in class com.epam.indigo.IndigoObject
 
clearAAM() - Method in class com.epam.indigo.IndigoObject
 
clearAlleneCenters() - Method in class com.epam.indigo.IndigoObject
 
clearAttachmentPoints() - Method in class com.epam.indigo.IndigoObject
 
clearCisTrans() - Method in class com.epam.indigo.IndigoObject
 
clearProperties() - Method in class com.epam.indigo.IndigoObject
 
clearStereocenters() - Method in class com.epam.indigo.IndigoObject
 
clearTautomerRules() - Method in class com.epam.indigo.Indigo
 
clearXYZ() - Method in class com.epam.indigo.IndigoObject
 
clone() - Method in class com.epam.indigo.IndigoObject
 
close() - Method in class com.epam.indigo.IndigoObject
 
cml() - Method in class com.epam.indigo.IndigoObject
 
cmlAppend(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
cmlFooter() - Method in class com.epam.indigo.IndigoObject
 
cmlHeader() - Method in class com.epam.indigo.IndigoObject
 
com.epam.indigo - package com.epam.indigo
 
commonBits(IndigoObject, IndigoObject) - Method in class com.epam.indigo.Indigo
 
component(int) - Method in class com.epam.indigo.IndigoObject
 
componentIndex() - Method in class com.epam.indigo.IndigoObject
 
copyRGroups(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
correctReactingCenters() - Method in class com.epam.indigo.IndigoObject
 
count() - Method in class com.epam.indigo.IndigoObject
 
countAlleneCenters() - Method in class com.epam.indigo.IndigoObject
 
countAtoms() - Method in class com.epam.indigo.IndigoObject
 
countAttachmentPoints() - Method in class com.epam.indigo.IndigoObject
 
countBits() - Method in class com.epam.indigo.IndigoObject
 
countBonds() - Method in class com.epam.indigo.IndigoObject
 
countCatalysts() - Method in class com.epam.indigo.IndigoObject
 
countComponents() - Method in class com.epam.indigo.IndigoObject
 
countDataSGroups() - Method in class com.epam.indigo.IndigoObject
 
countGenericSGroups() - Method in class com.epam.indigo.IndigoObject
 
countHeavyAtoms() - Method in class com.epam.indigo.IndigoObject
 
countHydrogens() - Method in class com.epam.indigo.IndigoObject
 
countImplicitHydrogens() - Method in class com.epam.indigo.IndigoObject
 
countMatches(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
countMatchesWithLimit(IndigoObject, int) - Method in class com.epam.indigo.IndigoObject
 
countMolecules() - Method in class com.epam.indigo.IndigoObject
 
countMultipleGroups() - Method in class com.epam.indigo.IndigoObject
 
countProducts() - Method in class com.epam.indigo.IndigoObject
 
countPseudoatoms() - Method in class com.epam.indigo.IndigoObject
 
countReactants() - Method in class com.epam.indigo.IndigoObject
 
countReferences() - Method in class com.epam.indigo.Indigo
 
countRepeatingUnits() - Method in class com.epam.indigo.IndigoObject
 
countRGroups() - Method in class com.epam.indigo.IndigoObject
 
countRSites() - Method in class com.epam.indigo.IndigoObject
 
countSSSR() - Method in class com.epam.indigo.IndigoObject
 
countStereocenters() - Method in class com.epam.indigo.IndigoObject
 
countSuperatoms() - Method in class com.epam.indigo.IndigoObject
 
createArray() - Method in class com.epam.indigo.Indigo
 
createDecomposer(IndigoObject) - Method in class com.epam.indigo.Indigo
 
createEdgeSubmolecule(int[], int[]) - Method in class com.epam.indigo.IndigoObject
 
createEdgeSubmolecule(Collection<Integer>, Collection<Integer>) - Method in class com.epam.indigo.IndigoObject
 
createFileSaver(String, String) - Method in class com.epam.indigo.Indigo
 
createMolecule() - Method in class com.epam.indigo.Indigo
 
createQueryMolecule() - Method in class com.epam.indigo.Indigo
 
createQueryReaction() - Method in class com.epam.indigo.Indigo
 
createReaction() - Method in class com.epam.indigo.Indigo
 
createSaver(IndigoObject, String) - Method in class com.epam.indigo.Indigo
 
createSGroup(String, IndigoObject, String) - Method in class com.epam.indigo.IndigoObject
 
createSubmolecule(int[]) - Method in class com.epam.indigo.IndigoObject
 
createSubmolecule(Collection<Integer>) - Method in class com.epam.indigo.IndigoObject
 

D

data() - Method in class com.epam.indigo.IndigoObject
 
dbgBreakpoint() - Method in class com.epam.indigo.Indigo
 
dbgInternalType() - Method in class com.epam.indigo.IndigoObject
 
dearomatize() - Method in class com.epam.indigo.IndigoObject
 
decomposedMoleculeHighlighted() - Method in class com.epam.indigo.IndigoObject
 
decomposedMoleculeScaffold() - Method in class com.epam.indigo.IndigoObject
 
decomposedMoleculeWithRGroups() - Method in class com.epam.indigo.IndigoObject
 
decomposeMolecule(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
decomposeMolecules(IndigoObject, IndigoObject) - Method in class com.epam.indigo.Indigo
Deprecated.
decomposeMolecules(IndigoObject, Collection<IndigoObject>) - Method in class com.epam.indigo.Indigo
Deprecated.
degree() - Method in class com.epam.indigo.IndigoObject
 
deleteSGroupAttachmentPoint(int) - Method in class com.epam.indigo.IndigoObject
 
description() - Method in class com.epam.indigo.IndigoObject
 
deserialize(byte[]) - Method in class com.epam.indigo.Indigo
 
destination() - Method in class com.epam.indigo.IndigoObject
 
dispatcher - Variable in class com.epam.indigo.IndigoObject
 
dispose() - Method in class com.epam.indigo.IndigoObject
 
DOUBLET - Static variable in class com.epam.indigo.Indigo
 
DOWN - Static variable in class com.epam.indigo.Indigo
 

E

EITHER - Static variable in class com.epam.indigo.Indigo
 
exactMatch(IndigoObject, IndigoObject, String) - Method in class com.epam.indigo.Indigo
 
exactMatch(IndigoObject, IndigoObject) - Method in class com.epam.indigo.Indigo
 
expandAbbreviations() - Method in class com.epam.indigo.IndigoObject
 
explicitValence() - Method in class com.epam.indigo.IndigoObject
 
extractCommonScaffold(IndigoObject, String) - Method in class com.epam.indigo.Indigo
 
extractCommonScaffold(Collection<IndigoObject>, String) - Method in class com.epam.indigo.Indigo
 

F

fasta(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
finalize() - Method in class com.epam.indigo.Indigo
 
finalize() - Method in class com.epam.indigo.IndigoObject
 
findSGroups(String, String) - Method in class com.epam.indigo.IndigoObject
 
findTemplate(String) - Method in class com.epam.indigo.IndigoObject
 
fingerprint() - Method in class com.epam.indigo.IndigoObject
 
fingerprint(String) - Method in class com.epam.indigo.IndigoObject
 
foldHydrogens() - Method in class com.epam.indigo.IndigoObject
 
foldUnfoldHydrogens() - Method in class com.epam.indigo.IndigoObject
 
fromNum(int) - Static method in enum com.epam.indigo.Hybridization
 

G

getAcidPkaValue(IndigoObject, int, int) - Method in class com.epam.indigo.IndigoObject
 
getAtom(int) - Method in class com.epam.indigo.IndigoObject
 
getBasicPkaValue(IndigoObject, int, int) - Method in class com.epam.indigo.IndigoObject
 
getBond(int) - Method in class com.epam.indigo.IndigoObject
 
getDataSGroup(int) - Method in class com.epam.indigo.IndigoObject
 
getFragmentedMolecule(IndigoObject, String) - Method in class com.epam.indigo.Indigo
 
getGenericSGroup(int) - Method in class com.epam.indigo.IndigoObject
 
getHybridization() - Method in class com.epam.indigo.IndigoObject
 
getHybridizationStr() - Method in class com.epam.indigo.IndigoObject
 
getIndigo() - Method in class com.epam.indigo.IndigoObject
 
getLibrary() - Static method in class com.epam.indigo.Indigo
 
getMolecule(int) - Method in class com.epam.indigo.IndigoObject
 
getMultipleGroup(int) - Method in class com.epam.indigo.IndigoObject
 
getNumVal() - Method in enum com.epam.indigo.Hybridization
 
getOption(String) - Method in class com.epam.indigo.Indigo
 
getOptionBool(String) - Method in class com.epam.indigo.Indigo
 
getOptionFloat(String) - Method in class com.epam.indigo.Indigo
 
getOptionInt(String) - Method in class com.epam.indigo.Indigo
 
getOptionType(String) - Method in class com.epam.indigo.Indigo
 
getOriginalFormat() - Method in class com.epam.indigo.IndigoObject
 
getPathToBinary(Class<?>, String, String, String) - Static method in class com.epam.indigo.IndigoUtils
 
getPlatformDependentPath() - Static method in class com.epam.indigo.Indigo
 
getProperty(String) - Method in class com.epam.indigo.IndigoObject
 
getRepeatingUnit(int) - Method in class com.epam.indigo.IndigoObject
 
getRepeatingUnitConnectivity() - Method in class com.epam.indigo.IndigoObject
 
getRepeatingUnitSubscript() - Method in class com.epam.indigo.IndigoObject
 
getSGroupClass() - Method in class com.epam.indigo.IndigoObject
 
getSGroupCoords() - Method in class com.epam.indigo.IndigoObject
 
getSGroupDisplayOption() - Method in class com.epam.indigo.IndigoObject
 
getSGroupIndex() - Method in class com.epam.indigo.IndigoObject
 
getSGroupMultiplier() - Method in class com.epam.indigo.IndigoObject
 
getSGroupName() - Method in class com.epam.indigo.IndigoObject
 
getSGroupNumCrossBonds() - Method in class com.epam.indigo.IndigoObject
 
getSGroupOriginalId() - Method in class com.epam.indigo.IndigoObject
 
getSGroupParentId() - Method in class com.epam.indigo.IndigoObject
 
getSGroupSeqId() - Method in class com.epam.indigo.IndigoObject
 
getSGroupType() - Method in class com.epam.indigo.IndigoObject
 
getSid() - Method in class com.epam.indigo.Indigo
 
getStrVal() - Method in enum com.epam.indigo.Hybridization
 
getSubmolecule(int[]) - Method in class com.epam.indigo.IndigoObject
 
getSubmolecule(Collection<Integer>) - Method in class com.epam.indigo.IndigoObject
 
getSuperatom(int) - Method in class com.epam.indigo.IndigoObject
 
getTemplateAtomClass() - Method in class com.epam.indigo.IndigoObject
 
getTGroupAlias() - Method in class com.epam.indigo.IndigoObject
 
getTGroupClass() - Method in class com.epam.indigo.IndigoObject
 
getTGroupName() - Method in class com.epam.indigo.IndigoObject
 
getUserSpecifiedPath() - Method in class com.epam.indigo.Indigo
 
grossFormula() - Method in class com.epam.indigo.IndigoObject
 

H

hasCoord() - Method in class com.epam.indigo.IndigoObject
 
hash() - Method in class com.epam.indigo.IndigoObject
 
hasNext() - Method in class com.epam.indigo.IndigoObject
 
hasProperty(String) - Method in class com.epam.indigo.IndigoObject
 
hasZCoord() - Method in class com.epam.indigo.IndigoObject
 
helm(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
highlight() - Method in class com.epam.indigo.IndigoObject
 
highlightedTarget() - Method in class com.epam.indigo.IndigoObject
 
Hybridization - Enum in com.epam.indigo
 

I

idt(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
ignoreAtom(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
index() - Method in class com.epam.indigo.IndigoObject
 
Indigo - Class in com.epam.indigo
 
Indigo(String) - Constructor for class com.epam.indigo.Indigo
 
Indigo() - Constructor for class com.epam.indigo.Indigo
 
INDIGO_DLL - Static variable in class com.epam.indigo.Indigo
 
indigoAddAtom(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddBond(int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddCatalyst(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddConstraint(int, String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddConstraintNot(int, String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddConstraintOr(int, String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddDataSGroup(int, int, int[], int, int[], String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddDecomposition(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddProduct(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddReactant(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddRSite(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddSGroupAttachmentPoint(int, int, int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddStereocenter(int, int, int, int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAddTemplate(int, int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoAlignAtoms(int, int, int[], float[]) - Method in interface com.epam.indigo.IndigoLib
 
indigoAllocSessionId() - Method in interface com.epam.indigo.IndigoLib
 
indigoAllScaffolds(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAppend(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAromatize(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoArrayAdd(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAt(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAtomicNumber(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoAutomap(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoBond(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoBondOrder(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoBondStereo(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoBuildPkaModel(int, float, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoCanonicalSmarts(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCanonicalSmiles(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCdxBase64(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCdxml(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoChangeStereocenterType(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheck(String, String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheck3DStereo(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckAmbiguousH(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckBadValence(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckChirality(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckObj(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckQuery(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckRGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckStereo(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckStructure(String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoCheckValence(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClean2d(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClear(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClearAAM(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClearAlleneCenters(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClearAttachmentPoints(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClearCisTrans(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClearProperties(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClearStereocenters(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClearTautomerRules() - Method in interface com.epam.indigo.IndigoLib
 
indigoClearXYZ(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClone(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoClose(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCml(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCmlAppend(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCmlFooter(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCmlHeader(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCommonBits(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoComponent(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoComponentIndex(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCopyRGroups(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCorrectReactingCenters(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCount(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountAlleneCenters(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountAtoms(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountAttachmentPoints(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountBits(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountBonds(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountCatalysts(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountComponents(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountDataSGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountGenericSGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountHeavyAtoms(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountHydrogens(int, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountImplicitHydrogens(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountMatches(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountMatchesWithLimit(int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountMolecules(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountMultipleGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountProducts(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountPseudoatoms(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountReactants(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountReferences() - Method in interface com.epam.indigo.IndigoLib
 
indigoCountRepeatingUnits(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountRGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountRSites(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountSSSR(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountStereocenters(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCountSuperatoms(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateArray() - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateDecomposer(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateEdgeSubmolecule(int, int, int[], int, int[]) - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateFileSaver(String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateMolecule() - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateQueryMolecule() - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateQueryReaction() - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateReaction() - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateSaver(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateSGroup(String, int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoCreateSubmolecule(int, int, int[]) - Method in interface com.epam.indigo.IndigoLib
 
indigoData(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDbgBreakpoint() - Method in interface com.epam.indigo.IndigoLib
 
indigoDbgInternalType(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDearomatize(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDecomposedMoleculeHighlighted(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDecomposedMoleculeScaffold(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDecomposedMoleculeWithRGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDecomposeMolecule(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDecomposeMolecules(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDegree(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDeleteSGroupAttachmentPoint(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDescription(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoDestination(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoExactMatch(int, int, String) - Method in interface com.epam.indigo.IndigoLib
 
IndigoException - Exception in com.epam.indigo
 
IndigoException(Object, String) - Constructor for exception com.epam.indigo.IndigoException
 
indigoExpandAbbreviations(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoExtractCommonScaffold(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoFasta(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoFindSGroups(int, String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoFindTemplate(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoFingerprint(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoFoldHydrogens(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoFoldUnfoldHydrogens(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoFree(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetAcidPkaValue(int, int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetAtom(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetAtomMappingNumber(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetBasicPkaValue(int, int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetBond(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetCharge(int, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetDataSGroup(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetExplicitValence(int, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetFragmentedMolecule(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetGenericSGroup(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetHybridization(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetLastError() - Method in interface com.epam.indigo.IndigoLib
 
indigoGetMolecule(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetMultipleGroup(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetOption(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetOptionBool(String, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetOptionFloat(String, FloatByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetOptionInt(String, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetOptionType(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetOriginalFormat(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetProperty(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetRadical(int, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetRadicalElectrons(int, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetReactingCenter(int, int, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetRepeatingUnit(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetRepeatingUnitConnectivity(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetRepeatingUnitSubscript(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupClass(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupCoords(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupDisplayOption(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupIndex(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupMultiplier(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupName(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupNumCrossBonds(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupOriginalId(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupParentId(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupSeqId(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSGroupType(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSubmolecule(int, int, int[]) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetSuperatom(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetTemplateAtomClass(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetTGroupAlias(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetTGroupClass(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGetTGroupName(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoGrossFormula(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoHasCoord(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoHash(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoHasNext(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoHasProperty(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoHasZCoord(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoHelm(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoHighlight(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoHighlightedTarget(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIdt(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIgnoreAtom(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIndex(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoInvertStereo(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIonize(int, float, float) - Method in interface com.epam.indigo.IndigoLib
 
indigoIsChiral(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIsHighlighted(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIsotope(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIsPossibleFischerProjection(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoIsPseudoatom(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIsRSite(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIsTemplateAtom(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateAlleneCenters(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateArray(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateAtoms(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateAttachmentPoints(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateBonds(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateCatalysts(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateCDX(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateCDXFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateCML(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateCMLFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateComponents(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateDataSGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateDecomposedMolecules(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateDecompositions(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateEdgeSubmolecules(int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateGenericSGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateMatches(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateMolecules(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateMultipleGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateNeighbors(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateProducts(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateProperties(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIteratePseudoatoms(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateRDF(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateRDFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateReactants(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateReactions(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateRepeatingUnits(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateRGroupFragments(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateRGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateRings(int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateRSites(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateSDF(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateSDFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateSGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateSmiles(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateSmilesFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateSSSR(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateStereocenters(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateSubtrees(int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateSuperatoms(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateTautomers(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoIterateTGroups(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoJson(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLayeredCode(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLayout(int) - Method in interface com.epam.indigo.IndigoLib
 
IndigoLib - Interface in com.epam.indigo
 
indigoLoadBuffer(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadFasta(int, String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadFastaFromFile(String, String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadFastaFromString(String, String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadFingerprintFromBuffer(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadFingerprintFromDescriptors(double[], int, int, double) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadHelm(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadHelmFromFile(String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadHelmFromString(String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadIdt(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadIdtFromFile(String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadIdtFromString(String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadKetDocument(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadKetDocumentFromFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadKetDocumentFromString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadMolecule(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadMoleculeFromBuffer(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadMoleculeFromFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadMoleculeFromString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadMonomerLibrary(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadMonomerLibraryFromFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadMonomerLibraryFromString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadQueryMolecule(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadQueryMoleculeFromBuffer(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadQueryMoleculeFromFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadQueryMoleculeFromString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadQueryReaction(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadQueryReactionFromBuffer(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadQueryReactionFromFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadQueryReactionFromString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadReaction(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadReactionFromBuffer(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadReactionFromFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadReactionFromString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadReactionSmarts(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadReactionSmartsFromBuffer(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadReactionSmartsFromFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadReactionSmartsFromString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadSequence(int, String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadSequenceFromFile(String, String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadSequenceFromString(String, String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadSmarts(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadSmartsFromBuffer(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadSmartsFromFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadSmartsFromString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadString(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadStructureFromBuffer(byte[], int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadStructureFromFile(String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLoadStructureFromString(String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoLogP(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMacroProperties(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMapAtom(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMapBond(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMapMolecule(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMarkEitherCisTrans(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMarkStereobonds(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMassComposition(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMatch(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMerge(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMolarRefractivity(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMolecularWeight(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMolfile(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMonoisotopicMass(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoMostAbundantMass(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoName(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoNameToStructure(String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoNext(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoNormalize(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoNumHydrogenBondAcceptors(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoNumHydrogenBondDonors(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoNumRotatableBonds(int) - Method in interface com.epam.indigo.IndigoLib
 
IndigoObject - Class in com.epam.indigo
 
IndigoObject(Indigo, int) - Constructor for class com.epam.indigo.IndigoObject
 
IndigoObject(Indigo, int, Object) - Constructor for class com.epam.indigo.IndigoObject
 
indigoOneBitsList(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoOptimize(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoPka(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoRawData(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoRdfAppend(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoRdfHeader(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoReactionProductEnumerate(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoReadFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoReleaseSessionId(long) - Method in interface com.epam.indigo.IndigoLib
 
indigoRemove(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoRemoveAtoms(int, int, int[]) - Method in interface com.epam.indigo.IndigoLib
 
indigoRemoveBonds(int, int, int[]) - Method in interface com.epam.indigo.IndigoLib
 
indigoRemoveConstraints(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoRemoveProperty(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoRemoveTautomerRule(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoRemoveTemplate(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoResetAtom(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoResetCharge(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoResetExplicitValence(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoResetIsotope(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoResetOption() - Method in interface com.epam.indigo.IndigoLib
 
indigoResetOptions() - Method in interface com.epam.indigo.IndigoLib
 
indigoResetRadical(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoResetStereo(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoResetSymmetricCisTrans(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoResetSymmetricStereocenters(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoRGroupComposition(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoRxnfile(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveCdxml(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveCdxmlToFile(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveCml(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveCmlToFile(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveFastaToFile(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveMDLCT(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveMolfile(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveMolfileToFile(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveRxnfile(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveRxnfileToFile(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveSequence3LetterToFile(int, String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSaveSequenceToFile(int, String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSdfAppend(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSequence(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSequence3Letter(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSerialize(int, PointerByReference, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetAtomMappingNumber(int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetAttachmentPoint(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetBondOrder(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetCharge(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetDataSGroupXY(int, float, float, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetExplicitValence(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetImplicitHCount(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetIsotope(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetName(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetOption(String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetOptionBool(String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetOptionColor(String, float, float, float) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetOptionFloat(String, float) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetOptionInt(String, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetOptionXY(String, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetProperty(int, String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetRadical(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetReactingCenter(int, int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetRSite(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSessionId(long) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupBrackets(int, int, float, float, float, float, float, float, float, float) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupClass(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupCoords(int, float, float) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupData(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupDataType(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupDescription(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupDisplay(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupDisplayOption(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupFieldName(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupLocation(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupMultiplier(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupName(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupOriginalId(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupParentId(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupQueryCode(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupQueryOper(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupTag(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupTagAlign(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupXCoord(int, float) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetSGroupYCoord(int, float) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetStereocenterGroup(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetTautomerRule(int, String, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetTemplateAtomClass(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSetXYZ(int, float, float, float) - Method in interface com.epam.indigo.IndigoLib
 
indigoSimilarity(int, int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSingleAllowedRGroup(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSmarts(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSmiles(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSmilesAppend(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSource(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoStandardize(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoStereocenterGroup(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoStereocenterPyramid(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoStereocenterType(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSubstructureMatcher(int, String) - Method in interface com.epam.indigo.IndigoLib
 
indigoSymbol(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoSymmetryClasses(int, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoTell(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoToBuffer(int, PointerByReference, IntByReference) - Method in interface com.epam.indigo.IndigoLib
 
indigoTopology(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoToString(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoTPSA(int, boolean) - Method in interface com.epam.indigo.IndigoLib
 
indigoTransform(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoTransformCTABtoSCSR(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoTransformHELMtoSCSR(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoTransformSCSRtoCTAB(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoUnfoldHydrogens(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoUnhighlight(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoUnignoreAllAtoms(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoUnignoreAtom(int, int) - Method in interface com.epam.indigo.IndigoLib
 
indigoUnserialize(byte[], int) - Method in interface com.epam.indigo.IndigoLib
 
IndigoUtils - Class in com.epam.indigo
 
IndigoUtils() - Constructor for class com.epam.indigo.IndigoUtils
 
indigoValence(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoValidateChirality(int) - Method in interface com.epam.indigo.IndigoLib
 
indigoVersion() - Method in interface com.epam.indigo.IndigoLib
 
indigoVersionInfo() - Method in interface com.epam.indigo.IndigoLib
 
indigoWriteBuffer() - Method in interface com.epam.indigo.IndigoLib
 
indigoWriteFile(String) - Method in interface com.epam.indigo.IndigoLib
 
indigoXYZ(int) - Method in interface com.epam.indigo.IndigoLib
 
invertStereo() - Method in class com.epam.indigo.IndigoObject
 
ionize(float, float) - Method in class com.epam.indigo.IndigoObject
 
isChiral() - Method in class com.epam.indigo.IndigoObject
 
isHighlighted() - Method in class com.epam.indigo.IndigoObject
 
isotope() - Method in class com.epam.indigo.IndigoObject
 
isPossibleFischerProjection(String) - Method in class com.epam.indigo.IndigoObject
 
isPseudoatom() - Method in class com.epam.indigo.IndigoObject
 
isRSite() - Method in class com.epam.indigo.IndigoObject
 
isTemplateAtom() - Method in class com.epam.indigo.IndigoObject
 
iterateAlleneCenters() - Method in class com.epam.indigo.IndigoObject
 
iterateArray() - Method in class com.epam.indigo.IndigoObject
 
iterateAtoms() - Method in class com.epam.indigo.IndigoObject
 
iterateAttachmentPoints(int) - Method in class com.epam.indigo.IndigoObject
 
iterateBonds() - Method in class com.epam.indigo.IndigoObject
 
iterateCatalysts() - Method in class com.epam.indigo.IndigoObject
 
iterateCDX(IndigoObject) - Method in class com.epam.indigo.Indigo
 
iterateCDXFile(String) - Method in class com.epam.indigo.Indigo
 
iterateCML(IndigoObject) - Method in class com.epam.indigo.Indigo
 
iterateCMLFile(String) - Method in class com.epam.indigo.Indigo
 
iterateComponents() - Method in class com.epam.indigo.IndigoObject
 
iterateDataSGroups() - Method in class com.epam.indigo.IndigoObject
 
iterateDecomposedMolecules() - Method in class com.epam.indigo.IndigoObject
Deprecated.
iterateDecompositions() - Method in class com.epam.indigo.IndigoObject
 
iterateEdgeSubmolecules(int, int) - Method in class com.epam.indigo.IndigoObject
 
iterateGenericSGroups() - Method in class com.epam.indigo.IndigoObject
 
iterateMatches(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
iterateMolecules() - Method in class com.epam.indigo.IndigoObject
 
iterateMultipleGroups() - Method in class com.epam.indigo.IndigoObject
 
iterateNeighbors() - Method in class com.epam.indigo.IndigoObject
 
iterateProducts() - Method in class com.epam.indigo.IndigoObject
 
iterateProperties() - Method in class com.epam.indigo.IndigoObject
 
iteratePseudoatoms() - Method in class com.epam.indigo.IndigoObject
 
iterateRDF(IndigoObject) - Method in class com.epam.indigo.Indigo
 
iterateRDFile(String) - Method in class com.epam.indigo.Indigo
 
iterateReactants() - Method in class com.epam.indigo.IndigoObject
 
iterateReactions() - Method in class com.epam.indigo.IndigoObject
 
iterateRepeatingUnits() - Method in class com.epam.indigo.IndigoObject
 
iterateRGroupFragments() - Method in class com.epam.indigo.IndigoObject
 
iterateRGroups() - Method in class com.epam.indigo.IndigoObject
 
iterateRings(int, int) - Method in class com.epam.indigo.IndigoObject
 
iterateRSites() - Method in class com.epam.indigo.IndigoObject
 
iterateSDF(IndigoObject) - Method in class com.epam.indigo.Indigo
 
iterateSDFile(String) - Method in class com.epam.indigo.Indigo
 
iterateSGroups() - Method in class com.epam.indigo.IndigoObject
 
iterateSmiles(IndigoObject) - Method in class com.epam.indigo.Indigo
 
iterateSmilesFile(String) - Method in class com.epam.indigo.Indigo
 
iterateSSSR() - Method in class com.epam.indigo.IndigoObject
 
iterateStereocenters() - Method in class com.epam.indigo.IndigoObject
 
iterateSubtrees(int, int) - Method in class com.epam.indigo.IndigoObject
 
iterateSuperatoms() - Method in class com.epam.indigo.IndigoObject
 
iterateTautomers(IndigoObject, String) - Method in class com.epam.indigo.Indigo
 
iterateTGroups() - Method in class com.epam.indigo.IndigoObject
 
iterator() - Method in class com.epam.indigo.IndigoObject
 

J

json() - Method in class com.epam.indigo.IndigoObject
 

L

layeredCode() - Method in class com.epam.indigo.IndigoObject
 
layout() - Method in class com.epam.indigo.IndigoObject
 
lib - Variable in class com.epam.indigo.IndigoObject
 
LIBINDIGO_DYLIB - Static variable in class com.epam.indigo.Indigo
 
LIBINDIGO_SO - Static variable in class com.epam.indigo.Indigo
 
loadBuffer(byte[]) - Method in class com.epam.indigo.Indigo
 
loadFasta(String, String, IndigoObject) - Method in class com.epam.indigo.Indigo
 
loadFastaFromFile(String, String, IndigoObject) - Method in class com.epam.indigo.Indigo
 
loadFingerprintFromBuffer(byte[]) - Method in class com.epam.indigo.Indigo
 
loadFingerprintFromDescriptors(double[], int, double) - Method in class com.epam.indigo.Indigo
 
loadHelm(String, IndigoObject) - Method in class com.epam.indigo.Indigo
 
loadHelmFromFile(String, IndigoObject) - Method in class com.epam.indigo.Indigo
 
loadIdt(String, IndigoObject) - Method in class com.epam.indigo.Indigo
 
loadIdtFromFile(String, IndigoObject) - Method in class com.epam.indigo.Indigo
 
loadKetDocument(String) - Method in class com.epam.indigo.Indigo
 
loadKetDocumentFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadMolecule(String) - Method in class com.epam.indigo.Indigo
 
loadMolecule(byte[]) - Method in class com.epam.indigo.Indigo
 
loadMoleculeFromBuffer(byte[]) - Method in class com.epam.indigo.Indigo
 
loadMoleculeFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadMonomerLibrary(String) - Method in class com.epam.indigo.Indigo
 
loadMonomerLibraryFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadQueryMolecule(String) - Method in class com.epam.indigo.Indigo
 
loadQueryMolecule(byte[]) - Method in class com.epam.indigo.Indigo
 
loadQueryMoleculeFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadQueryReaction(String) - Method in class com.epam.indigo.Indigo
 
loadQueryReaction(byte[]) - Method in class com.epam.indigo.Indigo
 
loadQueryReactionFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadReaction(String) - Method in class com.epam.indigo.Indigo
 
loadReaction(byte[]) - Method in class com.epam.indigo.Indigo
 
loadReactionFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadReactionSmarts(String) - Method in class com.epam.indigo.Indigo
 
loadReactionSmarts(byte[]) - Method in class com.epam.indigo.Indigo
 
loadReactionSmartsFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadSequence(String, String, IndigoObject) - Method in class com.epam.indigo.Indigo
 
loadSequenceFromFile(String, String, IndigoObject) - Method in class com.epam.indigo.Indigo
 
loadSmarts(String) - Method in class com.epam.indigo.Indigo
 
loadSmarts(byte[]) - Method in class com.epam.indigo.Indigo
 
loadSmartsFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadString(String) - Method in class com.epam.indigo.Indigo
 
loadStructure(String) - Method in class com.epam.indigo.Indigo
 
loadStructure(String, String) - Method in class com.epam.indigo.Indigo
 
loadStructure(byte[]) - Method in class com.epam.indigo.Indigo
 
loadStructure(byte[], String) - Method in class com.epam.indigo.Indigo
 
loadStructureFromBuffer(byte[]) - Method in class com.epam.indigo.Indigo
 
loadStructureFromBuffer(byte[], String) - Method in class com.epam.indigo.Indigo
 
loadStructureFromFile(String) - Method in class com.epam.indigo.Indigo
 
loadStructureFromFile(String, String) - Method in class com.epam.indigo.Indigo
 
logP() - Method in class com.epam.indigo.IndigoObject
 

M

macroProperties() - Method in class com.epam.indigo.IndigoObject
 
mapAtom(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
mapBond(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
mapMolecule(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
markEitherCisTrans() - Method in class com.epam.indigo.IndigoObject
 
markStereobonds() - Method in class com.epam.indigo.IndigoObject
 
massComposition() - Method in class com.epam.indigo.IndigoObject
 
match(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
mdlct() - Method in class com.epam.indigo.IndigoObject
 
merge(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
molarRefractivity() - Method in class com.epam.indigo.IndigoObject
 
molecularWeight() - Method in class com.epam.indigo.IndigoObject
 
molfile() - Method in class com.epam.indigo.IndigoObject
 
monoisotopicMass() - Method in class com.epam.indigo.IndigoObject
 
mostAbundantMass() - Method in class com.epam.indigo.IndigoObject
 

N

name() - Method in class com.epam.indigo.IndigoObject
 
nameToStructure(String) - Method in class com.epam.indigo.Indigo
 
nameToStructure(String, String) - Method in class com.epam.indigo.Indigo
 
next() - Method in class com.epam.indigo.IndigoObject
 
normalize() - Method in class com.epam.indigo.IndigoObject
 
normalize(String) - Method in class com.epam.indigo.IndigoObject
 
numHydrogenBondAcceptors() - Method in class com.epam.indigo.IndigoObject
 
numHydrogenBondDonors() - Method in class com.epam.indigo.IndigoObject
 
numRotatableBonds() - Method in class com.epam.indigo.IndigoObject
 

O

oneBitsList() - Method in class com.epam.indigo.IndigoObject
 
optimize() - Method in class com.epam.indigo.IndigoObject
 
optimize(String) - Method in class com.epam.indigo.IndigoObject
 
OR - Static variable in class com.epam.indigo.Indigo
 

P

pKa() - Method in class com.epam.indigo.IndigoObject
 

R

radical() - Method in class com.epam.indigo.IndigoObject
 
radicalElectrons() - Method in class com.epam.indigo.IndigoObject
 
rawData() - Method in class com.epam.indigo.IndigoObject
 
RC_CENTER - Static variable in class com.epam.indigo.Indigo
 
RC_MADE_OR_BROKEN - Static variable in class com.epam.indigo.Indigo
 
RC_NOT_CENTER - Static variable in class com.epam.indigo.Indigo
 
RC_ORDER_CHANGED - Static variable in class com.epam.indigo.Indigo
 
RC_UNCHANGED - Static variable in class com.epam.indigo.Indigo
 
RC_UNMARKED - Static variable in class com.epam.indigo.Indigo
 
rdfAppend(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
rdfHeader() - Method in class com.epam.indigo.IndigoObject
 
reactingCenter(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
reactionProductEnumerate(IndigoObject, IndigoObject) - Method in class com.epam.indigo.Indigo
 
reactionProductEnumerate(IndigoObject, Iterable<Iterable<IndigoObject>>) - Method in class com.epam.indigo.Indigo
 
remove() - Method in class com.epam.indigo.IndigoObject
 
removeAtoms(int[]) - Method in class com.epam.indigo.IndigoObject
 
removeAtoms(Collection<Integer>) - Method in class com.epam.indigo.IndigoObject
 
removeBonds(int[]) - Method in class com.epam.indigo.IndigoObject
 
removeBonds(Collection<Integer>) - Method in class com.epam.indigo.IndigoObject
 
removeConstraints(String) - Method in class com.epam.indigo.IndigoObject
 
removeProperty(String) - Method in class com.epam.indigo.IndigoObject
 
removeTautomerRule(int) - Method in class com.epam.indigo.Indigo
 
removeTemplate(String) - Method in class com.epam.indigo.IndigoObject
 
resetAtom(String) - Method in class com.epam.indigo.IndigoObject
 
resetCharge() - Method in class com.epam.indigo.IndigoObject
 
resetExplicitValence() - Method in class com.epam.indigo.IndigoObject
 
resetIsotope() - Method in class com.epam.indigo.IndigoObject
 
resetOptions() - Method in class com.epam.indigo.Indigo
 
resetRadical() - Method in class com.epam.indigo.IndigoObject
 
resetStereo() - Method in class com.epam.indigo.IndigoObject
 
resetSymmetricCisTrans() - Method in class com.epam.indigo.IndigoObject
 
resetSymmetricStereocenters() - Method in class com.epam.indigo.IndigoObject
 
rgroupComposition(IndigoObject, String) - Method in class com.epam.indigo.Indigo
 
RING - Static variable in class com.epam.indigo.Indigo
 
rxnfile() - Method in class com.epam.indigo.IndigoObject
 

S

saveCdxml(String) - Method in class com.epam.indigo.IndigoObject
 
saveCml(String) - Method in class com.epam.indigo.IndigoObject
 
saveFastaToFile(String) - Method in class com.epam.indigo.IndigoObject
 
saveMolfile(String) - Method in class com.epam.indigo.IndigoObject
 
saveRxnfile(String) - Method in class com.epam.indigo.IndigoObject
 
saveSequence3LetterToFile(String, IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
saveSequenceToFile(String, IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
sdfAppend(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
self - Variable in class com.epam.indigo.IndigoObject
 
sequence(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
sequence3Letter(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
serialize() - Method in class com.epam.indigo.IndigoObject
 
sessionReleased() - Method in class com.epam.indigo.Indigo
 
setAtomMappingNumber(IndigoObject, int) - Method in class com.epam.indigo.IndigoObject
 
setAttachmentPoint(int) - Method in class com.epam.indigo.IndigoObject
 
setBondOrder(int) - Method in class com.epam.indigo.IndigoObject
 
setCharge(int) - Method in class com.epam.indigo.IndigoObject
 
setDataSGroupXY(float, float) - Method in class com.epam.indigo.IndigoObject
 
setDataSGroupXY(float, float, String) - Method in class com.epam.indigo.IndigoObject
 
setExplicitValence(int) - Method in class com.epam.indigo.IndigoObject
 
setImplicitHCount(int) - Method in class com.epam.indigo.IndigoObject
 
setIsotope(int) - Method in class com.epam.indigo.IndigoObject
 
setName(String) - Method in class com.epam.indigo.IndigoObject
 
setOption(String, String) - Method in class com.epam.indigo.Indigo
 
setOption(String, int) - Method in class com.epam.indigo.Indigo
 
setOption(String, int, int) - Method in class com.epam.indigo.Indigo
 
setOption(String, float, float, float) - Method in class com.epam.indigo.Indigo
 
setOption(String, boolean) - Method in class com.epam.indigo.Indigo
 
setOption(String, float) - Method in class com.epam.indigo.Indigo
 
setOption(String, double) - Method in class com.epam.indigo.Indigo
 
setProperty(String, String) - Method in class com.epam.indigo.IndigoObject
 
setRadical(int) - Method in class com.epam.indigo.IndigoObject
 
setReactingCenter(IndigoObject, int) - Method in class com.epam.indigo.IndigoObject
 
setRSite(String) - Method in class com.epam.indigo.IndigoObject
 
setSessionID() - Method in class com.epam.indigo.Indigo
 
setSGroupBrackets(int, float, float, float, float, float, float, float, float) - Method in class com.epam.indigo.IndigoObject
 
setSGroupClass(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupCoords(float, float) - Method in class com.epam.indigo.IndigoObject
 
setSGroupData(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupDataType(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupDescription(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupDisplay(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupDisplayOption(int) - Method in class com.epam.indigo.IndigoObject
 
setSGroupFieldName(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupLocation(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupMultiplier(int) - Method in class com.epam.indigo.IndigoObject
 
setSGroupName(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupOriginalId(int) - Method in class com.epam.indigo.IndigoObject
 
setSGroupParentId(int) - Method in class com.epam.indigo.IndigoObject
 
setSGroupQueryCode(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupQueryOper(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupTag(String) - Method in class com.epam.indigo.IndigoObject
 
setSGroupTagAlign(int) - Method in class com.epam.indigo.IndigoObject
 
setSGroupXCoord(float) - Method in class com.epam.indigo.IndigoObject
 
setSGroupYCoord(float) - Method in class com.epam.indigo.IndigoObject
 
setStereocenterGroup(int) - Method in class com.epam.indigo.IndigoObject
 
setTautomerRule(int, String, String) - Method in class com.epam.indigo.Indigo
 
setTemplateAtomClass(String) - Method in class com.epam.indigo.IndigoObject
 
setXYZ(float, float, float) - Method in class com.epam.indigo.IndigoObject
 
setXYZ(float[]) - Method in class com.epam.indigo.IndigoObject
 
SG_TYPE_ANY - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_COM - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_COP - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_CRO - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_DAT - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_FOR - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_GEN - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_GRA - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_MER - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_MIX - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_MOD - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_MON - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_MUL - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_SRU - Static variable in class com.epam.indigo.Indigo
 
SG_TYPE_SUP - Static variable in class com.epam.indigo.Indigo
 
similarity(IndigoObject, IndigoObject) - Method in class com.epam.indigo.Indigo
 
similarity(IndigoObject, IndigoObject, String) - Method in class com.epam.indigo.Indigo
 
singleAllowedRGroup() - Method in class com.epam.indigo.IndigoObject
 
SINGLET - Static variable in class com.epam.indigo.Indigo
 
smarts() - Method in class com.epam.indigo.IndigoObject
 
smiles() - Method in class com.epam.indigo.IndigoObject
 
smilesAppend(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
source() - Method in class com.epam.indigo.IndigoObject
 
standardize() - Method in class com.epam.indigo.IndigoObject
 
stereocenterGroup() - Method in class com.epam.indigo.IndigoObject
 
stereocenterPyramid() - Method in class com.epam.indigo.IndigoObject
 
stereocenterType() - Method in class com.epam.indigo.IndigoObject
 
substructureMatcher(IndigoObject, String) - Method in class com.epam.indigo.Indigo
 
substructureMatcher(IndigoObject) - Method in class com.epam.indigo.Indigo
 
symbol() - Method in class com.epam.indigo.IndigoObject
 
symmetryClasses() - Method in class com.epam.indigo.IndigoObject
 

T

tell() - Method in class com.epam.indigo.IndigoObject
 
toBuffer() - Method in class com.epam.indigo.IndigoObject
 
toFloatArray(Collection<Float>) - Static method in class com.epam.indigo.Indigo
 
toIndigoArray(Collection<IndigoObject>) - Method in class com.epam.indigo.Indigo
 
toIntArray(Collection<Integer>) - Static method in class com.epam.indigo.Indigo
 
topology() - Method in class com.epam.indigo.IndigoObject
 
toString() - Method in class com.epam.indigo.IndigoObject
 
tpsa() - Method in class com.epam.indigo.IndigoObject
 
tpsa(boolean) - Method in class com.epam.indigo.IndigoObject
 
TRANS - Static variable in class com.epam.indigo.Indigo
 
transform(IndigoObject, IndigoObject) - Method in class com.epam.indigo.Indigo
 
transformCTABtoSCSR(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
transformHELMtoSCSR(IndigoObject) - Method in class com.epam.indigo.Indigo
 
transformSCSRtoCTAB() - Method in class com.epam.indigo.IndigoObject
 
TRIPLET - Static variable in class com.epam.indigo.Indigo
 

U

unfoldHydrogens() - Method in class com.epam.indigo.IndigoObject
 
unhighlight() - Method in class com.epam.indigo.IndigoObject
 
unignoreAllAtoms() - Method in class com.epam.indigo.IndigoObject
 
unignoreAtom(IndigoObject) - Method in class com.epam.indigo.IndigoObject
 
unserialize(byte[]) - Method in class com.epam.indigo.Indigo
Deprecated.
UP - Static variable in class com.epam.indigo.Indigo
 

V

valence() - Method in class com.epam.indigo.IndigoObject
 
validateChirality() - Method in class com.epam.indigo.IndigoObject
 
valueOf(String) - Static method in enum com.epam.indigo.Hybridization
Returns the enum constant of this type with the specified name.
values() - Static method in enum com.epam.indigo.Hybridization
Returns an array containing the constants of this enum type, in the order they are declared.
version() - Method in class com.epam.indigo.Indigo
 
versionInfo() - Method in class com.epam.indigo.Indigo
 

W

WIN_DLLS - Static variable in class com.epam.indigo.Indigo
 
writeBuffer() - Method in class com.epam.indigo.Indigo
 
writeFile(String) - Method in class com.epam.indigo.Indigo
 

X

xyz() - Method in class com.epam.indigo.IndigoObject
 
A B C D E F G H I J L M N O P R S T U V W X 
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