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ABS
- Static variable in class com.epam.indigo.
Indigo
addAtom(String)
- Method in class com.epam.indigo.
IndigoObject
addBond(IndigoObject, int)
- Method in class com.epam.indigo.
IndigoObject
addCatalyst(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
addConstraint(String, String)
- Method in class com.epam.indigo.
IndigoObject
addConstraintNot(String, String)
- Method in class com.epam.indigo.
IndigoObject
addConstraintOr(String, String)
- Method in class com.epam.indigo.
IndigoObject
addDataSGroup(int[], int[], String, String)
- Method in class com.epam.indigo.
IndigoObject
addDataSGroup(Collection<Integer>, Collection<Integer>, String, String)
- Method in class com.epam.indigo.
IndigoObject
addDecomposition(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
addProduct(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
addReactant(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
addRSite(String)
- Method in class com.epam.indigo.
IndigoObject
addSGroupAttachmentPoint(int, int, String)
- Method in class com.epam.indigo.
IndigoObject
addStereocenter(int, int, int, int)
- Method in class com.epam.indigo.
IndigoObject
addStereocenter(int, int, int, int, int)
- Method in class com.epam.indigo.
IndigoObject
addTemplate(IndigoObject, String)
- Method in class com.epam.indigo.
IndigoObject
alignAtoms(int[], float[])
- Method in class com.epam.indigo.
IndigoObject
alignAtoms(Collection<Integer>, Collection<Float>)
- Method in class com.epam.indigo.
IndigoObject
ALLENE
- Static variable in class com.epam.indigo.
Indigo
allScaffolds()
- Method in class com.epam.indigo.
IndigoObject
AND
- Static variable in class com.epam.indigo.
Indigo
append(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
aromatize()
- Method in class com.epam.indigo.
IndigoObject
arrayAdd(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
at(int)
- Method in class com.epam.indigo.
IndigoObject
atomicNumber()
- Method in class com.epam.indigo.
IndigoObject
atomMappingNumber(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
automap()
- Method in class com.epam.indigo.
IndigoObject
automap(String)
- Method in class com.epam.indigo.
IndigoObject
B
b64cdx()
- Method in class com.epam.indigo.
IndigoObject
bond()
- Method in class com.epam.indigo.
IndigoObject
bondOrder()
- Method in class com.epam.indigo.
IndigoObject
bondStereo()
- Method in class com.epam.indigo.
IndigoObject
buildPkaModel(int, float, String)
- Method in class com.epam.indigo.
Indigo
C
canonicalSmarts()
- Method in class com.epam.indigo.
IndigoObject
canonicalSmiles()
- Method in class com.epam.indigo.
IndigoObject
cdxml()
- Method in class com.epam.indigo.
IndigoObject
CHAIN
- Static variable in class com.epam.indigo.
Indigo
changeStereocenterType(int)
- Method in class com.epam.indigo.
IndigoObject
charge()
- Method in class com.epam.indigo.
IndigoObject
check(String, String, String)
- Method in class com.epam.indigo.
Indigo
check()
- Method in class com.epam.indigo.
IndigoObject
check(String)
- Method in class com.epam.indigo.
IndigoObject
check3DStereo()
- Method in class com.epam.indigo.
IndigoObject
checkAmbiguousH()
- Method in class com.epam.indigo.
IndigoObject
checkBadValence()
- Method in class com.epam.indigo.
IndigoObject
checkChirality()
- Method in class com.epam.indigo.
IndigoObject
checkQuery()
- Method in class com.epam.indigo.
IndigoObject
checkResult(Object, int)
- Static method in class com.epam.indigo.
Indigo
checkResult(Object, Object, int)
- Static method in class com.epam.indigo.
Indigo
checkResultDouble(Object, double)
- Static method in class com.epam.indigo.
Indigo
checkResultFloat(Object, float)
- Static method in class com.epam.indigo.
Indigo
checkResultLong(Object, long)
- Static method in class com.epam.indigo.
Indigo
checkResultPointer(Object, Pointer)
- Static method in class com.epam.indigo.
Indigo
checkResultString(Object, Pointer)
- Static method in class com.epam.indigo.
Indigo
checkRGroups()
- Method in class com.epam.indigo.
IndigoObject
checkStereo()
- Method in class com.epam.indigo.
IndigoObject
checkStructure(String)
- Method in class com.epam.indigo.
Indigo
checkStructure(String, String)
- Method in class com.epam.indigo.
Indigo
checkValence()
- Method in class com.epam.indigo.
IndigoObject
CIS
- Static variable in class com.epam.indigo.
Indigo
clean2d()
- Method in class com.epam.indigo.
IndigoObject
clear()
- Method in class com.epam.indigo.
IndigoObject
clearAAM()
- Method in class com.epam.indigo.
IndigoObject
clearAlleneCenters()
- Method in class com.epam.indigo.
IndigoObject
clearAttachmentPoints()
- Method in class com.epam.indigo.
IndigoObject
clearCisTrans()
- Method in class com.epam.indigo.
IndigoObject
clearProperties()
- Method in class com.epam.indigo.
IndigoObject
clearStereocenters()
- Method in class com.epam.indigo.
IndigoObject
clearTautomerRules()
- Method in class com.epam.indigo.
Indigo
clearXYZ()
- Method in class com.epam.indigo.
IndigoObject
clone()
- Method in class com.epam.indigo.
IndigoObject
close()
- Method in class com.epam.indigo.
IndigoObject
cml()
- Method in class com.epam.indigo.
IndigoObject
cmlAppend(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
cmlFooter()
- Method in class com.epam.indigo.
IndigoObject
cmlHeader()
- Method in class com.epam.indigo.
IndigoObject
com.epam.indigo
- package com.epam.indigo
commonBits(IndigoObject, IndigoObject)
- Method in class com.epam.indigo.
Indigo
component(int)
- Method in class com.epam.indigo.
IndigoObject
componentIndex()
- Method in class com.epam.indigo.
IndigoObject
copyRGroups(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
correctReactingCenters()
- Method in class com.epam.indigo.
IndigoObject
count()
- Method in class com.epam.indigo.
IndigoObject
countAlleneCenters()
- Method in class com.epam.indigo.
IndigoObject
countAtoms()
- Method in class com.epam.indigo.
IndigoObject
countAttachmentPoints()
- Method in class com.epam.indigo.
IndigoObject
countBits()
- Method in class com.epam.indigo.
IndigoObject
countBonds()
- Method in class com.epam.indigo.
IndigoObject
countCatalysts()
- Method in class com.epam.indigo.
IndigoObject
countComponents()
- Method in class com.epam.indigo.
IndigoObject
countDataSGroups()
- Method in class com.epam.indigo.
IndigoObject
countGenericSGroups()
- Method in class com.epam.indigo.
IndigoObject
countHeavyAtoms()
- Method in class com.epam.indigo.
IndigoObject
countHydrogens()
- Method in class com.epam.indigo.
IndigoObject
countImplicitHydrogens()
- Method in class com.epam.indigo.
IndigoObject
countMatches(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
countMatchesWithLimit(IndigoObject, int)
- Method in class com.epam.indigo.
IndigoObject
countMolecules()
- Method in class com.epam.indigo.
IndigoObject
countMultipleGroups()
- Method in class com.epam.indigo.
IndigoObject
countProducts()
- Method in class com.epam.indigo.
IndigoObject
countPseudoatoms()
- Method in class com.epam.indigo.
IndigoObject
countReactants()
- Method in class com.epam.indigo.
IndigoObject
countReferences()
- Method in class com.epam.indigo.
Indigo
countRepeatingUnits()
- Method in class com.epam.indigo.
IndigoObject
countRGroups()
- Method in class com.epam.indigo.
IndigoObject
countRSites()
- Method in class com.epam.indigo.
IndigoObject
countSSSR()
- Method in class com.epam.indigo.
IndigoObject
countStereocenters()
- Method in class com.epam.indigo.
IndigoObject
countSuperatoms()
- Method in class com.epam.indigo.
IndigoObject
createArray()
- Method in class com.epam.indigo.
Indigo
createDecomposer(IndigoObject)
- Method in class com.epam.indigo.
Indigo
createEdgeSubmolecule(int[], int[])
- Method in class com.epam.indigo.
IndigoObject
createEdgeSubmolecule(Collection<Integer>, Collection<Integer>)
- Method in class com.epam.indigo.
IndigoObject
createFileSaver(String, String)
- Method in class com.epam.indigo.
Indigo
createMolecule()
- Method in class com.epam.indigo.
Indigo
createQueryMolecule()
- Method in class com.epam.indigo.
Indigo
createQueryReaction()
- Method in class com.epam.indigo.
Indigo
createReaction()
- Method in class com.epam.indigo.
Indigo
createSaver(IndigoObject, String)
- Method in class com.epam.indigo.
Indigo
createSGroup(String, IndigoObject, String)
- Method in class com.epam.indigo.
IndigoObject
createSubmolecule(int[])
- Method in class com.epam.indigo.
IndigoObject
createSubmolecule(Collection<Integer>)
- Method in class com.epam.indigo.
IndigoObject
D
data()
- Method in class com.epam.indigo.
IndigoObject
dbgBreakpoint()
- Method in class com.epam.indigo.
Indigo
dbgInternalType()
- Method in class com.epam.indigo.
IndigoObject
dearomatize()
- Method in class com.epam.indigo.
IndigoObject
decomposedMoleculeHighlighted()
- Method in class com.epam.indigo.
IndigoObject
decomposedMoleculeScaffold()
- Method in class com.epam.indigo.
IndigoObject
decomposedMoleculeWithRGroups()
- Method in class com.epam.indigo.
IndigoObject
decomposeMolecule(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
decomposeMolecules(IndigoObject, IndigoObject)
- Method in class com.epam.indigo.
Indigo
Deprecated.
decomposeMolecules(IndigoObject, Collection<IndigoObject>)
- Method in class com.epam.indigo.
Indigo
Deprecated.
degree()
- Method in class com.epam.indigo.
IndigoObject
deleteSGroupAttachmentPoint(int)
- Method in class com.epam.indigo.
IndigoObject
description()
- Method in class com.epam.indigo.
IndigoObject
deserialize(byte[])
- Method in class com.epam.indigo.
Indigo
destination()
- Method in class com.epam.indigo.
IndigoObject
dispatcher
- Variable in class com.epam.indigo.
IndigoObject
dispose()
- Method in class com.epam.indigo.
IndigoObject
DOUBLET
- Static variable in class com.epam.indigo.
Indigo
DOWN
- Static variable in class com.epam.indigo.
Indigo
E
EITHER
- Static variable in class com.epam.indigo.
Indigo
exactMatch(IndigoObject, IndigoObject, String)
- Method in class com.epam.indigo.
Indigo
exactMatch(IndigoObject, IndigoObject)
- Method in class com.epam.indigo.
Indigo
expandAbbreviations()
- Method in class com.epam.indigo.
IndigoObject
explicitValence()
- Method in class com.epam.indigo.
IndigoObject
extractCommonScaffold(IndigoObject, String)
- Method in class com.epam.indigo.
Indigo
extractCommonScaffold(Collection<IndigoObject>, String)
- Method in class com.epam.indigo.
Indigo
F
fasta(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
finalize()
- Method in class com.epam.indigo.
Indigo
finalize()
- Method in class com.epam.indigo.
IndigoObject
findSGroups(String, String)
- Method in class com.epam.indigo.
IndigoObject
findTemplate(String)
- Method in class com.epam.indigo.
IndigoObject
fingerprint()
- Method in class com.epam.indigo.
IndigoObject
fingerprint(String)
- Method in class com.epam.indigo.
IndigoObject
foldHydrogens()
- Method in class com.epam.indigo.
IndigoObject
foldUnfoldHydrogens()
- Method in class com.epam.indigo.
IndigoObject
fromNum(int)
- Static method in enum com.epam.indigo.
Hybridization
G
getAcidPkaValue(IndigoObject, int, int)
- Method in class com.epam.indigo.
IndigoObject
getAtom(int)
- Method in class com.epam.indigo.
IndigoObject
getBasicPkaValue(IndigoObject, int, int)
- Method in class com.epam.indigo.
IndigoObject
getBond(int)
- Method in class com.epam.indigo.
IndigoObject
getDataSGroup(int)
- Method in class com.epam.indigo.
IndigoObject
getFragmentedMolecule(IndigoObject, String)
- Method in class com.epam.indigo.
Indigo
getGenericSGroup(int)
- Method in class com.epam.indigo.
IndigoObject
getHybridization()
- Method in class com.epam.indigo.
IndigoObject
getHybridizationStr()
- Method in class com.epam.indigo.
IndigoObject
getIndigo()
- Method in class com.epam.indigo.
IndigoObject
getLibrary()
- Static method in class com.epam.indigo.
Indigo
getMolecule(int)
- Method in class com.epam.indigo.
IndigoObject
getMultipleGroup(int)
- Method in class com.epam.indigo.
IndigoObject
getNumVal()
- Method in enum com.epam.indigo.
Hybridization
getOption(String)
- Method in class com.epam.indigo.
Indigo
getOptionBool(String)
- Method in class com.epam.indigo.
Indigo
getOptionFloat(String)
- Method in class com.epam.indigo.
Indigo
getOptionInt(String)
- Method in class com.epam.indigo.
Indigo
getOptionType(String)
- Method in class com.epam.indigo.
Indigo
getOriginalFormat()
- Method in class com.epam.indigo.
IndigoObject
getPathToBinary(Class<?>, String, String, String)
- Static method in class com.epam.indigo.
IndigoUtils
getPlatformDependentPath()
- Static method in class com.epam.indigo.
Indigo
getProperty(String)
- Method in class com.epam.indigo.
IndigoObject
getRepeatingUnit(int)
- Method in class com.epam.indigo.
IndigoObject
getRepeatingUnitConnectivity()
- Method in class com.epam.indigo.
IndigoObject
getRepeatingUnitSubscript()
- Method in class com.epam.indigo.
IndigoObject
getSGroupClass()
- Method in class com.epam.indigo.
IndigoObject
getSGroupCoords()
- Method in class com.epam.indigo.
IndigoObject
getSGroupDisplayOption()
- Method in class com.epam.indigo.
IndigoObject
getSGroupIndex()
- Method in class com.epam.indigo.
IndigoObject
getSGroupMultiplier()
- Method in class com.epam.indigo.
IndigoObject
getSGroupName()
- Method in class com.epam.indigo.
IndigoObject
getSGroupNumCrossBonds()
- Method in class com.epam.indigo.
IndigoObject
getSGroupOriginalId()
- Method in class com.epam.indigo.
IndigoObject
getSGroupParentId()
- Method in class com.epam.indigo.
IndigoObject
getSGroupSeqId()
- Method in class com.epam.indigo.
IndigoObject
getSGroupType()
- Method in class com.epam.indigo.
IndigoObject
getSid()
- Method in class com.epam.indigo.
Indigo
getStrVal()
- Method in enum com.epam.indigo.
Hybridization
getSubmolecule(int[])
- Method in class com.epam.indigo.
IndigoObject
getSubmolecule(Collection<Integer>)
- Method in class com.epam.indigo.
IndigoObject
getSuperatom(int)
- Method in class com.epam.indigo.
IndigoObject
getTemplateAtomClass()
- Method in class com.epam.indigo.
IndigoObject
getTGroupAlias()
- Method in class com.epam.indigo.
IndigoObject
getTGroupClass()
- Method in class com.epam.indigo.
IndigoObject
getTGroupName()
- Method in class com.epam.indigo.
IndigoObject
getUserSpecifiedPath()
- Method in class com.epam.indigo.
Indigo
grossFormula()
- Method in class com.epam.indigo.
IndigoObject
H
hasCoord()
- Method in class com.epam.indigo.
IndigoObject
hash()
- Method in class com.epam.indigo.
IndigoObject
hasNext()
- Method in class com.epam.indigo.
IndigoObject
hasProperty(String)
- Method in class com.epam.indigo.
IndigoObject
hasZCoord()
- Method in class com.epam.indigo.
IndigoObject
helm(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
highlight()
- Method in class com.epam.indigo.
IndigoObject
highlightedTarget()
- Method in class com.epam.indigo.
IndigoObject
Hybridization
- Enum in
com.epam.indigo
I
idt(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
ignoreAtom(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
index()
- Method in class com.epam.indigo.
IndigoObject
Indigo
- Class in
com.epam.indigo
Indigo(String)
- Constructor for class com.epam.indigo.
Indigo
Indigo()
- Constructor for class com.epam.indigo.
Indigo
INDIGO_DLL
- Static variable in class com.epam.indigo.
Indigo
indigoAddAtom(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddBond(int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddCatalyst(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddConstraint(int, String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddConstraintNot(int, String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddConstraintOr(int, String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddDataSGroup(int, int, int[], int, int[], String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddDecomposition(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddProduct(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddReactant(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddRSite(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddSGroupAttachmentPoint(int, int, int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddStereocenter(int, int, int, int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAddTemplate(int, int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoAlignAtoms(int, int, int[], float[])
- Method in interface com.epam.indigo.
IndigoLib
indigoAllocSessionId()
- Method in interface com.epam.indigo.
IndigoLib
indigoAllScaffolds(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAppend(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAromatize(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoArrayAdd(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAt(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAtomicNumber(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoAutomap(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoBond(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoBondOrder(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoBondStereo(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoBuildPkaModel(int, float, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoCanonicalSmarts(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCanonicalSmiles(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCdxBase64(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCdxml(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoChangeStereocenterType(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheck(String, String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheck3DStereo(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckAmbiguousH(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckBadValence(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckChirality(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckObj(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckQuery(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckRGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckStereo(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckStructure(String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoCheckValence(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClean2d(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClear(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClearAAM(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClearAlleneCenters(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClearAttachmentPoints(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClearCisTrans(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClearProperties(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClearStereocenters(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClearTautomerRules()
- Method in interface com.epam.indigo.
IndigoLib
indigoClearXYZ(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClone(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoClose(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCml(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCmlAppend(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCmlFooter(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCmlHeader(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCommonBits(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoComponent(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoComponentIndex(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCopyRGroups(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCorrectReactingCenters(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCount(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountAlleneCenters(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountAtoms(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountAttachmentPoints(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountBits(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountBonds(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountCatalysts(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountComponents(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountDataSGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountGenericSGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountHeavyAtoms(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountHydrogens(int, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountImplicitHydrogens(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountMatches(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountMatchesWithLimit(int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountMolecules(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountMultipleGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountProducts(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountPseudoatoms(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountReactants(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountReferences()
- Method in interface com.epam.indigo.
IndigoLib
indigoCountRepeatingUnits(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountRGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountRSites(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountSSSR(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountStereocenters(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCountSuperatoms(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateArray()
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateDecomposer(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateEdgeSubmolecule(int, int, int[], int, int[])
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateFileSaver(String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateMolecule()
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateQueryMolecule()
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateQueryReaction()
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateReaction()
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateSaver(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateSGroup(String, int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoCreateSubmolecule(int, int, int[])
- Method in interface com.epam.indigo.
IndigoLib
indigoData(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDbgBreakpoint()
- Method in interface com.epam.indigo.
IndigoLib
indigoDbgInternalType(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDearomatize(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDecomposedMoleculeHighlighted(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDecomposedMoleculeScaffold(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDecomposedMoleculeWithRGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDecomposeMolecule(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDecomposeMolecules(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDegree(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDeleteSGroupAttachmentPoint(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDescription(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoDestination(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoExactMatch(int, int, String)
- Method in interface com.epam.indigo.
IndigoLib
IndigoException
- Exception in
com.epam.indigo
IndigoException(Object, String)
- Constructor for exception com.epam.indigo.
IndigoException
indigoExpandAbbreviations(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoExtractCommonScaffold(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoFasta(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoFindSGroups(int, String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoFindTemplate(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoFingerprint(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoFoldHydrogens(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoFoldUnfoldHydrogens(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoFree(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetAcidPkaValue(int, int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetAtom(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetAtomMappingNumber(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetBasicPkaValue(int, int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetBond(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetCharge(int, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetDataSGroup(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetExplicitValence(int, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetFragmentedMolecule(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetGenericSGroup(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetHybridization(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetLastError()
- Method in interface com.epam.indigo.
IndigoLib
indigoGetMolecule(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetMultipleGroup(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetOption(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetOptionBool(String, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetOptionFloat(String, FloatByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetOptionInt(String, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetOptionType(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetOriginalFormat(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetProperty(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetRadical(int, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetRadicalElectrons(int, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetReactingCenter(int, int, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetRepeatingUnit(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetRepeatingUnitConnectivity(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetRepeatingUnitSubscript(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupClass(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupCoords(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupDisplayOption(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupIndex(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupMultiplier(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupName(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupNumCrossBonds(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupOriginalId(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupParentId(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupSeqId(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSGroupType(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSubmolecule(int, int, int[])
- Method in interface com.epam.indigo.
IndigoLib
indigoGetSuperatom(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetTemplateAtomClass(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetTGroupAlias(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetTGroupClass(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGetTGroupName(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoGrossFormula(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoHasCoord(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoHash(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoHasNext(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoHasProperty(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoHasZCoord(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoHelm(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoHighlight(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoHighlightedTarget(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIdt(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIgnoreAtom(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIndex(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoInvertStereo(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIonize(int, float, float)
- Method in interface com.epam.indigo.
IndigoLib
indigoIsChiral(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIsHighlighted(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIsotope(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIsPossibleFischerProjection(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoIsPseudoatom(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIsRSite(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIsTemplateAtom(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateAlleneCenters(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateArray(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateAtoms(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateAttachmentPoints(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateBonds(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateCatalysts(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateCDX(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateCDXFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateCML(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateCMLFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateComponents(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateDataSGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateDecomposedMolecules(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateDecompositions(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateEdgeSubmolecules(int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateGenericSGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateMatches(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateMolecules(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateMultipleGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateNeighbors(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateProducts(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateProperties(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIteratePseudoatoms(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateRDF(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateRDFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateReactants(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateReactions(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateRepeatingUnits(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateRGroupFragments(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateRGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateRings(int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateRSites(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateSDF(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateSDFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateSGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateSmiles(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateSmilesFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateSSSR(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateStereocenters(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateSubtrees(int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateSuperatoms(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateTautomers(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoIterateTGroups(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoJson(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLayeredCode(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLayout(int)
- Method in interface com.epam.indigo.
IndigoLib
IndigoLib
- Interface in
com.epam.indigo
indigoLoadBuffer(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadFasta(int, String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadFastaFromFile(String, String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadFastaFromString(String, String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadFingerprintFromBuffer(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadFingerprintFromDescriptors(double[], int, int, double)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadHelm(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadHelmFromFile(String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadHelmFromString(String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadIdt(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadIdtFromFile(String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadIdtFromString(String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadKetDocument(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadKetDocumentFromFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadKetDocumentFromString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadMolecule(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadMoleculeFromBuffer(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadMoleculeFromFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadMoleculeFromString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadMonomerLibrary(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadMonomerLibraryFromFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadMonomerLibraryFromString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadQueryMolecule(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadQueryMoleculeFromBuffer(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadQueryMoleculeFromFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadQueryMoleculeFromString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadQueryReaction(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadQueryReactionFromBuffer(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadQueryReactionFromFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadQueryReactionFromString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadReaction(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadReactionFromBuffer(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadReactionFromFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadReactionFromString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadReactionSmarts(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadReactionSmartsFromBuffer(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadReactionSmartsFromFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadReactionSmartsFromString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadSequence(int, String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadSequenceFromFile(String, String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadSequenceFromString(String, String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadSmarts(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadSmartsFromBuffer(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadSmartsFromFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadSmartsFromString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadString(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadStructureFromBuffer(byte[], int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadStructureFromFile(String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLoadStructureFromString(String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoLogP(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMapAtom(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMapBond(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMapMolecule(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMarkEitherCisTrans(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMarkStereobonds(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMassComposition(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMatch(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMerge(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMolarRefractivity(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMolecularWeight(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMolfile(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMonoisotopicMass(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoMostAbundantMass(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoName(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoNameToStructure(String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoNext(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoNormalize(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoNumHydrogenBondAcceptors(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoNumHydrogenBondDonors(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoNumRotatableBonds(int)
- Method in interface com.epam.indigo.
IndigoLib
IndigoObject
- Class in
com.epam.indigo
IndigoObject(Indigo, int)
- Constructor for class com.epam.indigo.
IndigoObject
IndigoObject(Indigo, int, Object)
- Constructor for class com.epam.indigo.
IndigoObject
indigoOneBitsList(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoOptimize(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoPka(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoRawData(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoRdfAppend(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoRdfHeader(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoReactionProductEnumerate(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoReadFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoReleaseSessionId(long)
- Method in interface com.epam.indigo.
IndigoLib
indigoRemove(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoRemoveAtoms(int, int, int[])
- Method in interface com.epam.indigo.
IndigoLib
indigoRemoveBonds(int, int, int[])
- Method in interface com.epam.indigo.
IndigoLib
indigoRemoveConstraints(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoRemoveProperty(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoRemoveTautomerRule(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoRemoveTemplate(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoResetAtom(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoResetCharge(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoResetExplicitValence(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoResetIsotope(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoResetOption()
- Method in interface com.epam.indigo.
IndigoLib
indigoResetOptions()
- Method in interface com.epam.indigo.
IndigoLib
indigoResetRadical(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoResetStereo(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoResetSymmetricCisTrans(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoResetSymmetricStereocenters(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoRGroupComposition(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoRxnfile(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveCdxml(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveCdxmlToFile(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveCml(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveCmlToFile(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveFastaToFile(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveMDLCT(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveMolfile(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveMolfileToFile(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveRxnfile(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveRxnfileToFile(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSaveSequenceToFile(int, String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSdfAppend(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSequence(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSerialize(int, PointerByReference, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetAtomMappingNumber(int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetAttachmentPoint(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetBondOrder(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetCharge(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetDataSGroupXY(int, float, float, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetExplicitValence(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetImplicitHCount(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetIsotope(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetName(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetOption(String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetOptionBool(String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetOptionColor(String, float, float, float)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetOptionFloat(String, float)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetOptionInt(String, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetOptionXY(String, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetProperty(int, String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetRadical(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetReactingCenter(int, int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetRSite(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSessionId(long)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupBrackets(int, int, float, float, float, float, float, float, float, float)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupClass(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupCoords(int, float, float)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupData(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupDataType(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupDescription(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupDisplay(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupDisplayOption(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupFieldName(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupLocation(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupMultiplier(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupName(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupOriginalId(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupParentId(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupQueryCode(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupQueryOper(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupTag(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupTagAlign(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupXCoord(int, float)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetSGroupYCoord(int, float)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetStereocenterGroup(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetTautomerRule(int, String, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetTemplateAtomClass(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSetXYZ(int, float, float, float)
- Method in interface com.epam.indigo.
IndigoLib
indigoSimilarity(int, int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSingleAllowedRGroup(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSmarts(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSmiles(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSmilesAppend(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSource(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoStandardize(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoStereocenterGroup(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoStereocenterPyramid(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoStereocenterType(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSubstructureMatcher(int, String)
- Method in interface com.epam.indigo.
IndigoLib
indigoSymbol(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoSymmetryClasses(int, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoTell(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoToBuffer(int, PointerByReference, IntByReference)
- Method in interface com.epam.indigo.
IndigoLib
indigoTopology(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoToString(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoTPSA(int, boolean)
- Method in interface com.epam.indigo.
IndigoLib
indigoTransform(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoTransformCTABtoSCSR(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoTransformHELMtoSCSR(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoTransformSCSRtoCTAB(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoUnfoldHydrogens(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoUnhighlight(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoUnignoreAllAtoms(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoUnignoreAtom(int, int)
- Method in interface com.epam.indigo.
IndigoLib
indigoUnserialize(byte[], int)
- Method in interface com.epam.indigo.
IndigoLib
IndigoUtils
- Class in
com.epam.indigo
IndigoUtils()
- Constructor for class com.epam.indigo.
IndigoUtils
indigoValence(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoValidateChirality(int)
- Method in interface com.epam.indigo.
IndigoLib
indigoVersion()
- Method in interface com.epam.indigo.
IndigoLib
indigoVersionInfo()
- Method in interface com.epam.indigo.
IndigoLib
indigoWriteBuffer()
- Method in interface com.epam.indigo.
IndigoLib
indigoWriteFile(String)
- Method in interface com.epam.indigo.
IndigoLib
indigoXYZ(int)
- Method in interface com.epam.indigo.
IndigoLib
invertStereo()
- Method in class com.epam.indigo.
IndigoObject
ionize(float, float)
- Method in class com.epam.indigo.
IndigoObject
isChiral()
- Method in class com.epam.indigo.
IndigoObject
isHighlighted()
- Method in class com.epam.indigo.
IndigoObject
isotope()
- Method in class com.epam.indigo.
IndigoObject
isPossibleFischerProjection(String)
- Method in class com.epam.indigo.
IndigoObject
isPseudoatom()
- Method in class com.epam.indigo.
IndigoObject
isRSite()
- Method in class com.epam.indigo.
IndigoObject
isTemplateAtom()
- Method in class com.epam.indigo.
IndigoObject
iterateAlleneCenters()
- Method in class com.epam.indigo.
IndigoObject
iterateArray()
- Method in class com.epam.indigo.
IndigoObject
iterateAtoms()
- Method in class com.epam.indigo.
IndigoObject
iterateAttachmentPoints(int)
- Method in class com.epam.indigo.
IndigoObject
iterateBonds()
- Method in class com.epam.indigo.
IndigoObject
iterateCatalysts()
- Method in class com.epam.indigo.
IndigoObject
iterateCDX(IndigoObject)
- Method in class com.epam.indigo.
Indigo
iterateCDXFile(String)
- Method in class com.epam.indigo.
Indigo
iterateCML(IndigoObject)
- Method in class com.epam.indigo.
Indigo
iterateCMLFile(String)
- Method in class com.epam.indigo.
Indigo
iterateComponents()
- Method in class com.epam.indigo.
IndigoObject
iterateDataSGroups()
- Method in class com.epam.indigo.
IndigoObject
iterateDecomposedMolecules()
- Method in class com.epam.indigo.
IndigoObject
Deprecated.
iterateDecompositions()
- Method in class com.epam.indigo.
IndigoObject
iterateEdgeSubmolecules(int, int)
- Method in class com.epam.indigo.
IndigoObject
iterateGenericSGroups()
- Method in class com.epam.indigo.
IndigoObject
iterateMatches(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
iterateMolecules()
- Method in class com.epam.indigo.
IndigoObject
iterateMultipleGroups()
- Method in class com.epam.indigo.
IndigoObject
iterateNeighbors()
- Method in class com.epam.indigo.
IndigoObject
iterateProducts()
- Method in class com.epam.indigo.
IndigoObject
iterateProperties()
- Method in class com.epam.indigo.
IndigoObject
iteratePseudoatoms()
- Method in class com.epam.indigo.
IndigoObject
iterateRDF(IndigoObject)
- Method in class com.epam.indigo.
Indigo
iterateRDFile(String)
- Method in class com.epam.indigo.
Indigo
iterateReactants()
- Method in class com.epam.indigo.
IndigoObject
iterateReactions()
- Method in class com.epam.indigo.
IndigoObject
iterateRepeatingUnits()
- Method in class com.epam.indigo.
IndigoObject
iterateRGroupFragments()
- Method in class com.epam.indigo.
IndigoObject
iterateRGroups()
- Method in class com.epam.indigo.
IndigoObject
iterateRings(int, int)
- Method in class com.epam.indigo.
IndigoObject
iterateRSites()
- Method in class com.epam.indigo.
IndigoObject
iterateSDF(IndigoObject)
- Method in class com.epam.indigo.
Indigo
iterateSDFile(String)
- Method in class com.epam.indigo.
Indigo
iterateSGroups()
- Method in class com.epam.indigo.
IndigoObject
iterateSmiles(IndigoObject)
- Method in class com.epam.indigo.
Indigo
iterateSmilesFile(String)
- Method in class com.epam.indigo.
Indigo
iterateSSSR()
- Method in class com.epam.indigo.
IndigoObject
iterateStereocenters()
- Method in class com.epam.indigo.
IndigoObject
iterateSubtrees(int, int)
- Method in class com.epam.indigo.
IndigoObject
iterateSuperatoms()
- Method in class com.epam.indigo.
IndigoObject
iterateTautomers(IndigoObject, String)
- Method in class com.epam.indigo.
Indigo
iterateTGroups()
- Method in class com.epam.indigo.
IndigoObject
iterator()
- Method in class com.epam.indigo.
IndigoObject
J
json()
- Method in class com.epam.indigo.
IndigoObject
L
layeredCode()
- Method in class com.epam.indigo.
IndigoObject
layout()
- Method in class com.epam.indigo.
IndigoObject
lib
- Variable in class com.epam.indigo.
IndigoObject
LIBINDIGO_DYLIB
- Static variable in class com.epam.indigo.
Indigo
LIBINDIGO_SO
- Static variable in class com.epam.indigo.
Indigo
loadBuffer(byte[])
- Method in class com.epam.indigo.
Indigo
loadFasta(String, String, IndigoObject)
- Method in class com.epam.indigo.
Indigo
loadFastaFromFile(String, String, IndigoObject)
- Method in class com.epam.indigo.
Indigo
loadFingerprintFromBuffer(byte[])
- Method in class com.epam.indigo.
Indigo
loadFingerprintFromDescriptors(double[], int, double)
- Method in class com.epam.indigo.
Indigo
loadHelm(String, IndigoObject)
- Method in class com.epam.indigo.
Indigo
loadHelmFromFile(String, IndigoObject)
- Method in class com.epam.indigo.
Indigo
loadIdt(String, IndigoObject)
- Method in class com.epam.indigo.
Indigo
loadIdtFromFile(String, IndigoObject)
- Method in class com.epam.indigo.
Indigo
loadKetDocument(String)
- Method in class com.epam.indigo.
Indigo
loadKetDocumentFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadMolecule(String)
- Method in class com.epam.indigo.
Indigo
loadMolecule(byte[])
- Method in class com.epam.indigo.
Indigo
loadMoleculeFromBuffer(byte[])
- Method in class com.epam.indigo.
Indigo
loadMoleculeFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadMonomerLibrary(String)
- Method in class com.epam.indigo.
Indigo
loadMonomerLibraryFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadQueryMolecule(String)
- Method in class com.epam.indigo.
Indigo
loadQueryMolecule(byte[])
- Method in class com.epam.indigo.
Indigo
loadQueryMoleculeFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadQueryReaction(String)
- Method in class com.epam.indigo.
Indigo
loadQueryReaction(byte[])
- Method in class com.epam.indigo.
Indigo
loadQueryReactionFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadReaction(String)
- Method in class com.epam.indigo.
Indigo
loadReaction(byte[])
- Method in class com.epam.indigo.
Indigo
loadReactionFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadReactionSmarts(String)
- Method in class com.epam.indigo.
Indigo
loadReactionSmarts(byte[])
- Method in class com.epam.indigo.
Indigo
loadReactionSmartsFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadSequence(String, String, IndigoObject)
- Method in class com.epam.indigo.
Indigo
loadSequenceFromFile(String, String, IndigoObject)
- Method in class com.epam.indigo.
Indigo
loadSmarts(String)
- Method in class com.epam.indigo.
Indigo
loadSmarts(byte[])
- Method in class com.epam.indigo.
Indigo
loadSmartsFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadString(String)
- Method in class com.epam.indigo.
Indigo
loadStructure(String)
- Method in class com.epam.indigo.
Indigo
loadStructure(String, String)
- Method in class com.epam.indigo.
Indigo
loadStructure(byte[])
- Method in class com.epam.indigo.
Indigo
loadStructure(byte[], String)
- Method in class com.epam.indigo.
Indigo
loadStructureFromBuffer(byte[])
- Method in class com.epam.indigo.
Indigo
loadStructureFromBuffer(byte[], String)
- Method in class com.epam.indigo.
Indigo
loadStructureFromFile(String)
- Method in class com.epam.indigo.
Indigo
loadStructureFromFile(String, String)
- Method in class com.epam.indigo.
Indigo
logP()
- Method in class com.epam.indigo.
IndigoObject
M
mapAtom(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
mapBond(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
mapMolecule(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
markEitherCisTrans()
- Method in class com.epam.indigo.
IndigoObject
markStereobonds()
- Method in class com.epam.indigo.
IndigoObject
massComposition()
- Method in class com.epam.indigo.
IndigoObject
match(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
mdlct()
- Method in class com.epam.indigo.
IndigoObject
merge(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
molarRefractivity()
- Method in class com.epam.indigo.
IndigoObject
molecularWeight()
- Method in class com.epam.indigo.
IndigoObject
molfile()
- Method in class com.epam.indigo.
IndigoObject
monoisotopicMass()
- Method in class com.epam.indigo.
IndigoObject
mostAbundantMass()
- Method in class com.epam.indigo.
IndigoObject
N
name()
- Method in class com.epam.indigo.
IndigoObject
nameToStructure(String)
- Method in class com.epam.indigo.
Indigo
nameToStructure(String, String)
- Method in class com.epam.indigo.
Indigo
next()
- Method in class com.epam.indigo.
IndigoObject
normalize()
- Method in class com.epam.indigo.
IndigoObject
normalize(String)
- Method in class com.epam.indigo.
IndigoObject
numHydrogenBondAcceptors()
- Method in class com.epam.indigo.
IndigoObject
numHydrogenBondDonors()
- Method in class com.epam.indigo.
IndigoObject
numRotatableBonds()
- Method in class com.epam.indigo.
IndigoObject
O
oneBitsList()
- Method in class com.epam.indigo.
IndigoObject
optimize()
- Method in class com.epam.indigo.
IndigoObject
optimize(String)
- Method in class com.epam.indigo.
IndigoObject
OR
- Static variable in class com.epam.indigo.
Indigo
P
pKa()
- Method in class com.epam.indigo.
IndigoObject
R
radical()
- Method in class com.epam.indigo.
IndigoObject
radicalElectrons()
- Method in class com.epam.indigo.
IndigoObject
rawData()
- Method in class com.epam.indigo.
IndigoObject
RC_CENTER
- Static variable in class com.epam.indigo.
Indigo
RC_MADE_OR_BROKEN
- Static variable in class com.epam.indigo.
Indigo
RC_NOT_CENTER
- Static variable in class com.epam.indigo.
Indigo
RC_ORDER_CHANGED
- Static variable in class com.epam.indigo.
Indigo
RC_UNCHANGED
- Static variable in class com.epam.indigo.
Indigo
RC_UNMARKED
- Static variable in class com.epam.indigo.
Indigo
rdfAppend(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
rdfHeader()
- Method in class com.epam.indigo.
IndigoObject
reactingCenter(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
reactionProductEnumerate(IndigoObject, IndigoObject)
- Method in class com.epam.indigo.
Indigo
reactionProductEnumerate(IndigoObject, Iterable<Iterable<IndigoObject>>)
- Method in class com.epam.indigo.
Indigo
remove()
- Method in class com.epam.indigo.
IndigoObject
removeAtoms(int[])
- Method in class com.epam.indigo.
IndigoObject
removeAtoms(Collection<Integer>)
- Method in class com.epam.indigo.
IndigoObject
removeBonds(int[])
- Method in class com.epam.indigo.
IndigoObject
removeBonds(Collection<Integer>)
- Method in class com.epam.indigo.
IndigoObject
removeConstraints(String)
- Method in class com.epam.indigo.
IndigoObject
removeProperty(String)
- Method in class com.epam.indigo.
IndigoObject
removeTautomerRule(int)
- Method in class com.epam.indigo.
Indigo
removeTemplate(String)
- Method in class com.epam.indigo.
IndigoObject
resetAtom(String)
- Method in class com.epam.indigo.
IndigoObject
resetCharge()
- Method in class com.epam.indigo.
IndigoObject
resetExplicitValence()
- Method in class com.epam.indigo.
IndigoObject
resetIsotope()
- Method in class com.epam.indigo.
IndigoObject
resetOptions()
- Method in class com.epam.indigo.
Indigo
resetRadical()
- Method in class com.epam.indigo.
IndigoObject
resetStereo()
- Method in class com.epam.indigo.
IndigoObject
resetSymmetricCisTrans()
- Method in class com.epam.indigo.
IndigoObject
resetSymmetricStereocenters()
- Method in class com.epam.indigo.
IndigoObject
rgroupComposition(IndigoObject, String)
- Method in class com.epam.indigo.
Indigo
RING
- Static variable in class com.epam.indigo.
Indigo
rxnfile()
- Method in class com.epam.indigo.
IndigoObject
S
saveCdxml(String)
- Method in class com.epam.indigo.
IndigoObject
saveCml(String)
- Method in class com.epam.indigo.
IndigoObject
saveFastaToFile(String)
- Method in class com.epam.indigo.
IndigoObject
saveMolfile(String)
- Method in class com.epam.indigo.
IndigoObject
saveRxnfile(String)
- Method in class com.epam.indigo.
IndigoObject
saveSequenceToFile(String, IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
sdfAppend(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
self
- Variable in class com.epam.indigo.
IndigoObject
sequence(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
serialize()
- Method in class com.epam.indigo.
IndigoObject
sessionReleased()
- Method in class com.epam.indigo.
Indigo
setAtomMappingNumber(IndigoObject, int)
- Method in class com.epam.indigo.
IndigoObject
setAttachmentPoint(int)
- Method in class com.epam.indigo.
IndigoObject
setBondOrder(int)
- Method in class com.epam.indigo.
IndigoObject
setCharge(int)
- Method in class com.epam.indigo.
IndigoObject
setDataSGroupXY(float, float)
- Method in class com.epam.indigo.
IndigoObject
setDataSGroupXY(float, float, String)
- Method in class com.epam.indigo.
IndigoObject
setExplicitValence(int)
- Method in class com.epam.indigo.
IndigoObject
setImplicitHCount(int)
- Method in class com.epam.indigo.
IndigoObject
setIsotope(int)
- Method in class com.epam.indigo.
IndigoObject
setName(String)
- Method in class com.epam.indigo.
IndigoObject
setOption(String, String)
- Method in class com.epam.indigo.
Indigo
setOption(String, int)
- Method in class com.epam.indigo.
Indigo
setOption(String, int, int)
- Method in class com.epam.indigo.
Indigo
setOption(String, float, float, float)
- Method in class com.epam.indigo.
Indigo
setOption(String, boolean)
- Method in class com.epam.indigo.
Indigo
setOption(String, float)
- Method in class com.epam.indigo.
Indigo
setOption(String, double)
- Method in class com.epam.indigo.
Indigo
setProperty(String, String)
- Method in class com.epam.indigo.
IndigoObject
setRadical(int)
- Method in class com.epam.indigo.
IndigoObject
setReactingCenter(IndigoObject, int)
- Method in class com.epam.indigo.
IndigoObject
setRSite(String)
- Method in class com.epam.indigo.
IndigoObject
setSessionID()
- Method in class com.epam.indigo.
Indigo
setSGroupBrackets(int, float, float, float, float, float, float, float, float)
- Method in class com.epam.indigo.
IndigoObject
setSGroupClass(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupCoords(float, float)
- Method in class com.epam.indigo.
IndigoObject
setSGroupData(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupDataType(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupDescription(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupDisplay(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupDisplayOption(int)
- Method in class com.epam.indigo.
IndigoObject
setSGroupFieldName(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupLocation(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupMultiplier(int)
- Method in class com.epam.indigo.
IndigoObject
setSGroupName(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupOriginalId(int)
- Method in class com.epam.indigo.
IndigoObject
setSGroupParentId(int)
- Method in class com.epam.indigo.
IndigoObject
setSGroupQueryCode(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupQueryOper(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupTag(String)
- Method in class com.epam.indigo.
IndigoObject
setSGroupTagAlign(int)
- Method in class com.epam.indigo.
IndigoObject
setSGroupXCoord(float)
- Method in class com.epam.indigo.
IndigoObject
setSGroupYCoord(float)
- Method in class com.epam.indigo.
IndigoObject
setStereocenterGroup(int)
- Method in class com.epam.indigo.
IndigoObject
setTautomerRule(int, String, String)
- Method in class com.epam.indigo.
Indigo
setTemplateAtomClass(String)
- Method in class com.epam.indigo.
IndigoObject
setXYZ(float, float, float)
- Method in class com.epam.indigo.
IndigoObject
setXYZ(float[])
- Method in class com.epam.indigo.
IndigoObject
SG_TYPE_ANY
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_COM
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_COP
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_CRO
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_DAT
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_FOR
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_GEN
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_GRA
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_MER
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_MIX
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_MOD
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_MON
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_MUL
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_SRU
- Static variable in class com.epam.indigo.
Indigo
SG_TYPE_SUP
- Static variable in class com.epam.indigo.
Indigo
similarity(IndigoObject, IndigoObject)
- Method in class com.epam.indigo.
Indigo
similarity(IndigoObject, IndigoObject, String)
- Method in class com.epam.indigo.
Indigo
singleAllowedRGroup()
- Method in class com.epam.indigo.
IndigoObject
SINGLET
- Static variable in class com.epam.indigo.
Indigo
smarts()
- Method in class com.epam.indigo.
IndigoObject
smiles()
- Method in class com.epam.indigo.
IndigoObject
smilesAppend(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
source()
- Method in class com.epam.indigo.
IndigoObject
standardize()
- Method in class com.epam.indigo.
IndigoObject
stereocenterGroup()
- Method in class com.epam.indigo.
IndigoObject
stereocenterPyramid()
- Method in class com.epam.indigo.
IndigoObject
stereocenterType()
- Method in class com.epam.indigo.
IndigoObject
substructureMatcher(IndigoObject, String)
- Method in class com.epam.indigo.
Indigo
substructureMatcher(IndigoObject)
- Method in class com.epam.indigo.
Indigo
symbol()
- Method in class com.epam.indigo.
IndigoObject
symmetryClasses()
- Method in class com.epam.indigo.
IndigoObject
T
tell()
- Method in class com.epam.indigo.
IndigoObject
toBuffer()
- Method in class com.epam.indigo.
IndigoObject
toFloatArray(Collection<Float>)
- Static method in class com.epam.indigo.
Indigo
toIndigoArray(Collection<IndigoObject>)
- Method in class com.epam.indigo.
Indigo
toIntArray(Collection<Integer>)
- Static method in class com.epam.indigo.
Indigo
topology()
- Method in class com.epam.indigo.
IndigoObject
toString()
- Method in class com.epam.indigo.
IndigoObject
tpsa()
- Method in class com.epam.indigo.
IndigoObject
tpsa(boolean)
- Method in class com.epam.indigo.
IndigoObject
TRANS
- Static variable in class com.epam.indigo.
Indigo
transform(IndigoObject, IndigoObject)
- Method in class com.epam.indigo.
Indigo
transformCTABtoSCSR(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
transformHELMtoSCSR(IndigoObject)
- Method in class com.epam.indigo.
Indigo
transformSCSRtoCTAB()
- Method in class com.epam.indigo.
IndigoObject
TRIPLET
- Static variable in class com.epam.indigo.
Indigo
U
unfoldHydrogens()
- Method in class com.epam.indigo.
IndigoObject
unhighlight()
- Method in class com.epam.indigo.
IndigoObject
unignoreAllAtoms()
- Method in class com.epam.indigo.
IndigoObject
unignoreAtom(IndigoObject)
- Method in class com.epam.indigo.
IndigoObject
unserialize(byte[])
- Method in class com.epam.indigo.
Indigo
Deprecated.
Use
deserialize(byte[])
instead
UP
- Static variable in class com.epam.indigo.
Indigo
V
valence()
- Method in class com.epam.indigo.
IndigoObject
validateChirality()
- Method in class com.epam.indigo.
IndigoObject
valueOf(String)
- Static method in enum com.epam.indigo.
Hybridization
Returns the enum constant of this type with the specified name.
values()
- Static method in enum com.epam.indigo.
Hybridization
Returns an array containing the constants of this enum type, in the order they are declared.
version()
- Method in class com.epam.indigo.
Indigo
versionInfo()
- Method in class com.epam.indigo.
Indigo
W
WIN_DLLS
- Static variable in class com.epam.indigo.
Indigo
writeBuffer()
- Method in class com.epam.indigo.
Indigo
writeFile(String)
- Method in class com.epam.indigo.
Indigo
X
xyz()
- Method in class com.epam.indigo.
IndigoObject
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