Bingo Oracle

• Installation Manual: Oracle
  • System Requirements
    • Operating Systems
    • Database Servers
    • Tested Configurations
  • Installation Prerequisites
    • All Systems
    • Windows
    • Linux (32-bit or 64-bit) or Solaris
    • 64-bit Linux or Solaris, with 32-bit extproc
    • Mac OS X (64-bit)
  • Installation Procedure
    • All Systems
    • Windows
    • Linux, Solaris, or Mac OS X
    • Examples
    • Checking the Installation
  • Uninstalling the Cartridge
• User Manual: Oracle
  • Basics
    • Data representation
      • Daylight Formats with ChemAxon Extensions
      • MDL Formats
      • Internal Binary Formats
    • Storage
      • Choosing the format
      • Choosing the Oracle Data Type
      • Mixing formats
      • Conversion
      • Performance Notice
    • Indices
      • Creating an Index
        • Index Parameters
        • Monitoring the Index Creation Process
      • Updating and Dropping Index
    • Queries
  • Molecules
    • Conversion to SMILES
      • Converting a Table
    • Conversion to Binary Format
      • Converting a Table
    • Creating an Index
    • Substructure Search
      • Description and Syntax
      • Substructure Query Features
        • Explicit Hydrogens
        • Charges and Radicals
        • Isotopes
        • Valence
        • Preventing Hydrogen Substitutions
        • Number of Non-Hydrogen Substitutions
        • Unsaturation flag
        • Ring Bond Count
        • Bond Topology
        • Query Atom Labels
        • Atom Lists
        • Query Bonds
      • Cis-trans Isomerism
      • Chirality
      • Markush Search
      • Aromaticity in Substructure Search and Markush Search
        • Basic Queries
        • Queries with Query Features
        • Aromaticity and Markush Search
        • Charge and Aromaticity
      • Pseudo-atoms
      • Resonance Search
      • 3D Constraints
      • Affine Transformation Search
      • Conformational Search
    • SMARTS Search
      • Differences between substructure and SMARTS matching
    • Exact Search
    • Tautomer Search
      • Syntax
      • Exact Tautomer Search
      • Tautomer Substructure Search
      • Customizing the Rules
      • Tautomer Substructure Search Based on InChI or reaction SMARTS
    • Similarity Search
      • Description and Syntax
      • Examples
    • Gross Formula Search
      • Description and Syntax
      • Examples
    • Molecular Mass Search
      • Description and syntax
      • Examples
      • Customization
      • Other Kinds of Molecular Weight
    • Canonical SMILES
    • Molecule Fingerprints
    • InChI and InChIKey
  • Reactions
    • Conversion to Reaction SMILES
      • Converting a Table
    • Conversion to binary format
      • Converting a table
    • Creating an Index
    • Exact Search
    • SMARTS Search
    • Substructure Search
      • Description and Syntax
      • Examples
    • Automatic Atom-to-Atom Mapping
      • Description and Syntax
      • Examples
    • Reaction Fingerprints
  • Nonstandard Queries
    • Finding Non-Matches
    • Fragment Highlighting
    • Multiple Conditions and Joins
  • Importing and Exporting Data
    • Importing SDFiles, RDFiles, and SMILES files
    • Exporting SDFiles
  • Utility Functions
    • Extracting the Names of Molecules and Reactions
    • Conversion to Molfiles/Rxnfiles and CML
    • Checking Molecules and Reactions for Correctness
    • Reading and Writing Files on Server
    • GZip Compression and Decompression
  • Maintenance
    • Obtaining the Bingo Version Number
    • Viewing the Log File
• Performance Tips: Oracle
  • General
  • Indexing
  • Search
• Building from Source
  • Unpack the Source Code
  • Copy the OCI files
    • On All Systems
    • On 32-bit Windows
    • On 64-bit Windows
    • On Mac OS X
  • Build